Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CDG60_RS02495 Genome accession   NZ_CP032134
Coordinates   358394..359620 (-) Length   408 a.a.
NCBI ID   WP_087512625.1    Uniprot ID   -
Organism   Acinetobacter chinensis strain WCHAc010005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353394..364620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG60_RS02470 (CDG60_02470) - 354765..355088 (+) 324 WP_087512620.1 pyrimidine/purine nucleoside phosphorylase -
  CDG60_RS02475 (CDG60_02475) rlmB 355220..355969 (+) 750 WP_087512621.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CDG60_RS02480 (CDG60_02480) - 356004..356918 (+) 915 WP_087512622.1 DMT family transporter -
  CDG60_RS02485 (CDG60_02485) coaE 356920..357519 (-) 600 WP_087512623.1 dephospho-CoA kinase -
  CDG60_RS02490 (CDG60_02490) pilD 357534..358394 (-) 861 WP_087512624.1 A24 family peptidase Machinery gene
  CDG60_RS02495 (CDG60_02495) pilC 358394..359620 (-) 1227 WP_087512625.1 type II secretion system F family protein Machinery gene
  CDG60_RS02500 (CDG60_02500) pilB 359649..361361 (-) 1713 WP_087512626.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CDG60_RS02505 (CDG60_02505) tpiA 361647..362438 (+) 792 WP_087512627.1 triose-phosphate isomerase -
  CDG60_RS02510 (CDG60_02510) secG 362452..362784 (+) 333 WP_087512628.1 preprotein translocase subunit SecG -
  CDG60_RS02535 (CDG60_02535) rimP 363579..364103 (+) 525 WP_087512629.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44874.39 Da        Isoelectric Point: 9.8660

>NTDB_id=313816 CDG60_RS02495 WP_087512625.1 358394..359620(-) (pilC) [Acinetobacter chinensis strain WCHAc010005]
MAVKKAQMMPNFIYEGVDRKGAKIKGEMPARNMALAKVTLRKQGITIKTIREKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPASVVVVAIIVTIILMVKVVPVFQELFTSFGADLPAFTKMVVNMSEWMQKYWFILIIAIGAAIA
AFMEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNVVYEQAVMKIRDDVA
TGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=313816 CDG60_RS02495 WP_087512625.1 358394..359620(-) (pilC) [Acinetobacter chinensis strain WCHAc010005]
ATGGCTGTCAAAAAAGCACAGATGATGCCAAACTTCATCTACGAAGGGGTTGATCGTAAAGGGGCTAAGATTAAAGGGGA
AATGCCGGCACGAAACATGGCTTTAGCCAAAGTGACGCTGCGCAAACAAGGGATCACCATCAAAACCATTCGGGAAAAGA
AAAAGAATATTCTCGAAGGGCTGATGAAGAAGAAAGTATCCACGCTTGATATCACGATCTTCACCCGTCAGCTTGCAACC
ATGATGAAAGCCGGTGTACCTTTGGTACAAAGTTTTGAAATTGTTGCAGAAGGTCTTGAAAACCCTGCCATGCGTGAAGT
TGTTCTTGGCATTAAAGGTGAAGTCGAAGGCGGTAATACTTTTGCAGGTGCCCTGAAAAAATATCCACAGTATTTTGACA
ACCTGTTCTGTTCACTGGTCGAGTCAGGAGAACAGTCCGGTGCCCTTGAAACCATGCTGGATCGTGTAGCAATCTATAAA
GAAAAAAGTGAACTGCTTAAACAGAAAATTAAAAAGGCCATGAAGTATCCAGCCAGTGTAGTTGTGGTCGCTATTATTGT
GACAATTATTCTGATGGTTAAAGTCGTGCCTGTTTTCCAGGAACTGTTCACTTCATTTGGTGCAGACCTACCGGCATTTA
CCAAAATGGTGGTGAACATGTCTGAATGGATGCAGAAATACTGGTTCATTCTGATTATTGCCATTGGTGCCGCCATCGCA
GCGTTCATGGAAGCCAAAAAGCGCAGTAAAAAATTCCGTGATTTCCTGGATAAAGCAGCACTGAAAGCACCTATTTTTGG
TGATCTGGTATATAAAGCCATTATTGCCCGTTACAGTCGTACTCTTGCGACCACTTTCGCGGCTGGTGTACCGTTAATTG
AAGCACTTGAATCTACAGCAGGTGCAACCAATAACGTGGTTTATGAACAGGCCGTCATGAAAATCAGGGATGATGTCGCA
ACAGGACAACAGCTCCAGTTTGCCATGCGGGTTACGGATAAATTCCCATCCATGGCAGTACAGATGGTTGCAATTGGCGA
AGAATCCGGTGCACTGGATGCCATGCTGGATAAAGTGGCTACACACTATGAAAATGAAGTGGACAATGCCGTGGATGGAT
TGACCTCTATGATGGAACCTTTGATCATGGCTGTACTGGGGGTACTGGTCGGTGGTCTGGTTATCGCAATGTATCTACCA
ATCTTCCAGATGGGCTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.461

100

0.895
  pilC Acinetobacter baylyi ADP1

83.824

100

0.838
  pilC Pseudomonas stutzeri DSM 10701

61.965

97.304

0.603
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.627

100

0.436
  pilC Vibrio campbellii strain DS40M4

41.191

98.775

0.407
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment