Detailed information NTG0313815

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CDG60_RS02490
• Genome accession: NZ_CP032134
• Coordinates: 357534..358394 (-)
• Length: 286 a.a.
• NCBI ID: WP_087512624.1
• Uniprot ID: -
• Organism: Acinetobacter chinensis strain WCHAc010005
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 352534..363394

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CDG60_RS02465 (CDG60_02465)	-	353385..354683 (+)	1299	WP_087512619.1	lipopolysaccharide assembly protein LapB	-
CDG60_RS02470 (CDG60_02470)	-	354765..355088 (+)	324	WP_087512620.1	pyrimidine/purine nucleoside phosphorylase	-
CDG60_RS02475 (CDG60_02475)	rlmB	355220..355969 (+)	750	WP_087512621.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
CDG60_RS02480 (CDG60_02480)	-	356004..356918 (+)	915	WP_087512622.1	DMT family transporter	-
CDG60_RS02485 (CDG60_02485)	coaE	356920..357519 (-)	600	WP_087512623.1	dephospho-CoA kinase	-
CDG60_RS02490 (CDG60_02490)	pilD	357534..358394 (-)	861	WP_087512624.1	A24 family peptidase	Machinery gene
CDG60_RS02495 (CDG60_02495)	pilC	358394..359620 (-)	1227	WP_087512625.1	type II secretion system F family protein	Machinery gene
CDG60_RS02500 (CDG60_02500)	pilB	359649..361361 (-)	1713	WP_087512626.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CDG60_RS02505 (CDG60_02505)	tpiA	361647..362438 (+)	792	WP_087512627.1	triose-phosphate isomerase	-
CDG60_RS02510 (CDG60_02510)	secG	362452..362784 (+)	333	WP_087512628.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31844.85 Da
• Isoelectric Point: 7.5040

>NTDB_id=313815 CDG60_RS02490 WP_087512624.1 357534..358394(-) (pilD) [Acinetobacter chinensis strain WCHAc010005]
MQEIISYLSTTPTALYLAVGIFSLCIGSFLNVVIYRTPKMMEQEWRQECQLYLHPDHPPEHETPITLSKPASTCPKCQSE
IRWYQNIPVVSWLALRGKCGNCSNPISIRYPFIELLTTACSLTVVAVFGPSIQMLAGLLLTWVLIALTFIDFDTQLLPDR
YTLPLAAIGLAVNSYSVFTSPASSIWGYVIGFLCLWVVYYLFKVVTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSM
VGAVIGIILLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=313815 CDG60_RS02490 WP_087512624.1 357534..358394(-) (pilD) [Acinetobacter chinensis strain WCHAc010005]
ATGCAGGAAATTATCTCTTATTTAAGTACAACCCCAACTGCACTTTATCTGGCAGTTGGGATTTTCAGTTTATGTATCGG
CAGTTTTCTGAATGTCGTTATTTATCGCACCCCGAAAATGATGGAACAGGAATGGCGACAGGAATGTCAGCTGTACCTGC
ATCCAGATCACCCACCAGAACATGAAACTCCAATAACGCTGAGTAAACCCGCATCGACCTGCCCAAAGTGTCAGTCAGAA
ATCCGCTGGTATCAGAATATTCCTGTTGTCAGCTGGCTGGCATTACGTGGCAAGTGTGGTAACTGCTCCAATCCAATCAG
TATCCGCTATCCTTTTATTGAACTGCTGACTACTGCCTGTTCACTGACTGTCGTTGCAGTATTTGGTCCATCCATTCAGA
TGCTTGCAGGGCTGCTACTGACCTGGGTATTAATTGCATTAACTTTCATAGATTTTGACACACAGTTACTGCCTGACCGT
TATACCCTGCCACTTGCAGCGATTGGCCTTGCAGTAAACAGCTATTCAGTATTCACATCCCCTGCTTCATCCATATGGGG
ATATGTGATTGGCTTCCTTTGCCTCTGGGTCGTCTATTATCTGTTTAAAGTCGTGACCGGCAAAGAAGGCATGGGGTATG
GTGACTTTAAACTGCTGGCTGCATTGGGTGCATGGATGGGTCCTTTGCTCCTGCCTTTGATTGTGTTACTTTCATCCATG
GTCGGCGCGGTAATTGGTATTATTTTACTGAAAATCCGCAAAGAAAATCAGCCCTTTGCTTTTGGTCCTTATATTGCCAT
TGCTGGCTGGATTGCCTTTTTATGGGGTGAACAGATCATGAAAATTTATCTTGGGCAGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	76.842	99.65	0.766
pilD	Acinetobacter nosocomialis M2	76.14	99.65	0.759
pilD	Vibrio campbellii strain DS40M4	55.556	94.406	0.524
pilD	Vibrio cholerae strain A1552	54.613	94.755	0.517
pilD	Neisseria gonorrhoeae MS11	46.494	94.755	0.441