Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   D2E16_RS00950 Genome accession   NZ_CP032064
Coordinates   158724..159119 (+) Length   131 a.a.
NCBI ID   WP_024396542.1    Uniprot ID   A0A6L8MWZ3
Organism   Streptococcus suis strain YSJ17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 153724..164119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS00915 (D2E16_00945) - 153945..154085 (+) 141 WP_099875943.1 putative holin-like toxin -
  D2E16_RS00920 (D2E16_00950) pepA 154405..155466 (-) 1062 WP_024418201.1 glutamyl aminopeptidase -
  D2E16_RS00925 (D2E16_00955) - 155613..155897 (+) 285 WP_002940015.1 DUF4651 domain-containing protein -
  D2E16_RS00930 (D2E16_00960) - 155894..156214 (+) 321 WP_099875945.1 thioredoxin family protein -
  D2E16_RS00935 (D2E16_00965) - 156259..157215 (+) 957 WP_192369525.1 DUF1002 domain-containing protein -
  D2E16_RS00940 (D2E16_00970) ytpR 157234..157857 (+) 624 WP_192369526.1 YtpR family tRNA-binding protein -
  D2E16_RS00945 (D2E16_00975) - 157890..158669 (-) 780 WP_192369527.1 DUF2785 domain-containing protein -
  D2E16_RS00950 (D2E16_00980) ssbA 158724..159119 (+) 396 WP_024396542.1 single-stranded DNA-binding protein Machinery gene
  D2E16_RS00955 - 159500..159799 (-) 300 WP_192369539.1 hypothetical protein -
  D2E16_RS00960 (D2E16_00990) groES 160000..160281 (+) 282 WP_014637330.1 co-chaperone GroES -
  D2E16_RS00965 (D2E16_00995) groL 160292..161914 (+) 1623 WP_029188148.1 chaperonin GroEL -
  D2E16_RS00970 (D2E16_01000) rpsL 162146..162559 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  D2E16_RS00975 (D2E16_01005) rpsG 162576..163046 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14893.79 Da        Isoelectric Point: 5.0026

>NTDB_id=313514 D2E16_RS00950 WP_024396542.1 158724..159119(+) (ssbA) [Streptococcus suis strain YSJ17]
MYNKVILIGRLTAQPELTQTPNGKNLTRVTIAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=313514 D2E16_RS00950 WP_024396542.1 158724..159119(+) (ssbA) [Streptococcus suis strain YSJ17]
ATGTATAATAAAGTTATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACCCCTAACGGTAAAAATCTGAC
TCGTGTCACAATTGCTGTGAATCGCCGTTTCAAAACTGAAAATGGTGAGCGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGGGCAAACTGGCGGAAACGCTTGTTTCCTATGGCAGCAAGGGAAGTCTGATTTCTATTGATGGTGAATTGCGGACGCGA
AAATATGAAAAAGACGGTAGCAACCATTATGTGACTGAAATCTTAGGACAATCCTTCCAGTTGCTCGAAAGCCGTGCCCA
ACGTGCCATGCGTGAAAATAACACAGGCGATGATCTAGCTGACTTGGTCTTGGAAGAAGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L8MWZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae R6

73.282

100

0.733
  ssbB/cilA Streptococcus mitis SK321

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae D39

73.282

100

0.733
  ssbB/cilA Streptococcus mitis NCTC 12261

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

73.282

100

0.733
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

80.916

0.389

Multiple sequence alignment