Detailed information NTG0000313

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: STER_RS08895
• Genome accession: NC_008532
• Coordinates: 1699209..1699601 (-)
• Length: 130 a.a.
• NCBI ID: WP_011227579.1
• Uniprot ID: A0A2S4DWC9
• Organism: Streptococcus thermophilus LMD-9
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1694209..1704601

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STER_RS08865 (STER_1814)	dapD	1694510..1695208 (-)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
STER_RS12165 (STER_1815)	-	1695294..1696049 (-)	756	Protein_1675	HAD family hydrolase	-
STER_RS08875 (STER_1816)	-	1696164..1696997 (-)	834	WP_011681672.1	putative RNA methyltransferase	-
STER_RS08880 (STER_1817)	-	1697366..1697533 (+)	168	WP_011681673.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
STER_RS08885 (STER_1818)	-	1697586..1697849 (+)	264	WP_011681674.1	hypothetical protein	-
STER_RS08890 (STER_1819)	tadA	1697930..1698448 (-)	519	WP_011681675.1	tRNA adenosine(34) deaminase TadA	-
STER_RS08895 (STER_1821)	ssbA	1699209..1699601 (-)	393	WP_011227579.1	single-stranded DNA-binding protein	Machinery gene
STER_RS08900 (STER_1822)	-	1699806..1700033 (-)	228	WP_003095911.1	sulfurtransferase TusA family protein	-
STER_RS08905 (STER_1823)	-	1700048..1701079 (-)	1032	WP_011681677.1	YeeE/YedE family protein	-
STER_RS08910 (STER_1824)	ytpR	1701217..1701840 (-)	624	WP_002952017.1	YtpR family tRNA-binding protein	-
STER_RS08915 (STER_1825)	-	1701850..1702164 (-)	315	WP_011226613.1	thioredoxin family protein	-
STER_RS08920 (STER_1826)	-	1702161..1702445 (-)	285	WP_011681678.1	DUF4651 domain-containing protein	-
STER_RS08925 (STER_1827)	pepA	1702545..1703612 (+)	1068	WP_002952022.1	glutamyl aminopeptidase	-
STER_RS08930 (STER_1828)	proC	1703628..1704398 (+)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=313 STER_RS08895 WP_011227579.1 1699209..1699601(-) (ssbA) [Streptococcus thermophilus LMD-9]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=313 STER_RS08895 WP_011227579.1 1699209..1699601(-) (ssbA) [Streptococcus thermophilus LMD-9]
ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGCGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCCTCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A2S4DWC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	80.153	100	0.808
ssbB/cilA	Streptococcus pneumoniae TIGR4	75.573	100	0.762
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus mitis SK321	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae R6	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae Rx1	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae D39	74.809	100	0.754
ssbB/cilA	Streptococcus mitis NCTC 12261	73.282	100	0.738
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	86.154	0.531
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.113	81.538	0.392
ssb	Latilactobacillus sakei subsp. sakei 23K	47.17	81.538	0.385