Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AhaeAN59_RS01725 Genome accession   NZ_CP031972
Coordinates   369010..371142 (+) Length   710 a.a.
NCBI ID   WP_171265847.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain AN59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364010..376142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN59_RS01705 (AhaeAN59_01745) comM 366012..367070 (+) 1059 WP_004641327.1 pilus assembly protein PilM Machinery gene
  AhaeAN59_RS01710 (AhaeAN59_01750) pilN 367070..367714 (+) 645 WP_004641325.1 PilN domain-containing protein Machinery gene
  AhaeAN59_RS01715 (AhaeAN59_01755) pilO 367711..368421 (+) 711 WP_005088515.1 type 4a pilus biogenesis protein PilO Machinery gene
  AhaeAN59_RS01720 (AhaeAN59_01760) pilP 368421..368948 (+) 528 WP_005088514.1 pilus assembly protein PilP Machinery gene
  AhaeAN59_RS01725 (AhaeAN59_01765) pilQ 369010..371142 (+) 2133 WP_171265847.1 type IV pilus secretin PilQ family protein Machinery gene
  AhaeAN59_RS01730 (AhaeAN59_01770) aroK 371181..371723 (+) 543 WP_005087029.1 shikimate kinase AroK -
  AhaeAN59_RS01735 (AhaeAN59_01775) aroB 371744..372829 (+) 1086 WP_125502217.1 3-dehydroquinate synthase -
  AhaeAN59_RS01740 (AhaeAN59_01780) - 372845..373717 (+) 873 WP_125502215.1 hypothetical protein -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77334.10 Da        Isoelectric Point: 7.2173

>NTDB_id=312998 AhaeAN59_RS01725 WP_171265847.1 369010..371142(+) (pilQ) [Acinetobacter haemolyticus strain AN59]
MNRAFRQFSMGAVAIAVMQVASAQVNMTNIVPMSLADQGTEIRVMFNGLPPQPQAYQLEQPSRLILDFDKAKQTLKQSSI
PVGTNEASSVEVAADDQRSRVIVNLKDAGAFTTRVEGNTFILKINSARPAIASPVSATARQVQQGVSNIGFQRGNQGEGL
VVIDLLGSNTPVDVQQQGSKIVVRTMGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEEKSPLKAKSQTYTGNKISLDFQDIEVRRVLQLLADFTNINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPIQSEYIKLSYAKAADILKLIEDSRDGKAGMSNRTANTDSLALE
SLLSPRGSAVADVRTNTLIVNDTAQNIDKIRKMVDLLDVSVKQVMIEARIVRASTDFTREMGVKWGILSQGVTRNNDLLV
GGSDTTLWNLREPKKDSETGGWKYEIERPDNLNVDLGATTAGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKVM
TADKQPAKIESGTKIPYSSSTGAGANAVPKTEFIDATLSLDVTPSITPDGKVMMKLNITKDAPSNPTPTGQLTISKNSID
TNVLVDNGETVVLGGIFEQENISSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=312998 AhaeAN59_RS01725 WP_171265847.1 369010..371142(+) (pilQ) [Acinetobacter haemolyticus strain AN59]
ATGAATCGTGCATTCCGTCAATTTTCAATGGGTGCTGTCGCAATAGCAGTGATGCAGGTAGCATCAGCACAAGTGAACAT
GACCAACATTGTGCCAATGAGTTTGGCTGATCAGGGGACTGAAATTCGTGTCATGTTTAATGGTCTGCCACCACAGCCGC
AGGCATATCAACTTGAACAACCCTCTCGTTTGATTTTGGATTTTGATAAAGCTAAACAAACCTTAAAGCAGAGTTCTATA
CCTGTTGGAACCAATGAAGCCAGTTCAGTAGAAGTCGCTGCGGATGACCAGCGTTCTCGCGTGATTGTGAATTTGAAAGA
TGCAGGCGCTTTTACCACACGTGTAGAAGGTAATACTTTTATTCTAAAAATTAATTCTGCGCGTCCTGCTATTGCGAGTC
CTGTATCTGCGACTGCCCGTCAAGTACAACAAGGGGTTTCAAATATTGGTTTCCAACGTGGCAATCAAGGTGAAGGTCTA
GTTGTGATTGATTTATTGGGTAGTAATACGCCAGTAGATGTACAACAGCAAGGGAGTAAAATCGTTGTGCGGACGATGGG
GAACAAAATTCCGACCCATTTAGCACGTCGTTTAAATACCAATGATTTCGCAACTCCTGTAGCAAGTATTGATGCCTATA
ATGATAAAGGTAATGGTGTGATTACCATTCAGTCTGCGGGTAGTTATGAATACATGGCTTATCAAGCTGAAAATAAACTG
ACGATTAGTTTAAAGCGACCTGAAGAAAAATCACCATTAAAAGCAAAATCTCAAACTTATACTGGCAATAAGATTTCTTT
AGATTTCCAAGATATTGAAGTGCGTCGTGTGCTGCAGTTACTTGCTGATTTTACCAATATCAATATGGTGGCTGCTGATA
CGGTACAAGGGAATATTACTTTACGCCTAAAAGATGTACCTTGGGATCAGGCTTTGGATATCGTCTTAAAGACCAAAAAT
CTAGATAAGCGTCGTAATGGTAATGTGATATGGATCGCGCCAGTTTCAGAGTTGATTAAGGCTGAGGAAGAAGAGGCGAA
AGCCATTGCTCAAAGTGTAAAGCTTGCACCAATTCAATCTGAATATATCAAGCTGAGCTATGCAAAAGCAGCAGATATTT
TAAAACTGATCGAAGATTCTCGTGATGGTAAAGCTGGTATGTCCAATCGGACAGCAAACACAGATTCACTTGCTTTAGAA
AGCTTATTGAGTCCGCGAGGTAGTGCTGTCGCAGATGTGCGTACTAATACTTTGATCGTAAATGATACGGCCCAAAATAT
TGACAAGATCCGTAAGATGGTGGATCTGTTAGATGTTTCAGTTAAACAGGTGATGATCGAAGCCCGTATTGTTCGGGCGA
GCACAGACTTTACTCGGGAGATGGGGGTCAAGTGGGGAATCCTATCTCAAGGTGTTACCCGTAATAATGACCTGTTAGTT
GGTGGAAGTGACACTACGCTGTGGAATTTGAGAGAGCCGAAAAAAGATAGCGAAACTGGTGGGTGGAAATATGAAATCGA
ACGTCCCGATAATTTAAATGTAGACTTGGGGGCAACGACTGCAGGTGCAAGTCGTATTGCTTTTGGCTTAATTAGTCTCT
CTGATTTTATGTTGGATTTAGAGCTTTCAGCAGTGCAAGCTGATGGATATGGTGAGGTTATTTCAACACCAAAAGTAATG
ACAGCCGATAAGCAGCCTGCAAAAATTGAGTCAGGAACCAAAATTCCTTATTCATCTTCAACAGGTGCAGGTGCAAATGC
AGTACCTAAGACGGAGTTTATTGATGCAACATTGAGTTTGGATGTGACCCCAAGTATCACGCCAGATGGAAAAGTCATGA
TGAAGCTCAATATCACCAAGGATGCTCCAAGTAATCCAACACCAACAGGTCAGCTAACGATTAGCAAAAACTCAATTGAT
ACCAATGTTTTGGTTGATAATGGTGAAACTGTAGTGCTTGGTGGTATTTTTGAGCAGGAAAATATCAGCTCACAAATTAA
AGTGCCATTTTTAGGTGATCTTCCGTATGTGGGACGACTTTTCCGTCGTGATCTGAAAACAGACAATAAACGTGAACTGC
TTATTTTTGTGACACCGAGAATTGTTAATGACACTTTGACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II and III secretion system protein (Secretin)

(544-702)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-443)

AMIN domain (AMIN)

(37-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.586

100

0.761
  pilQ Acinetobacter baumannii strain A118

74.448

100

0.759
  comQ Acinetobacter baylyi ADP1

70.99

100

0.717
  pilQ Pseudomonas aeruginosa PAK

39.674

100

0.411
  pilQ Legionella pneumophila strain ERS1305867

39.111

95.07

0.372
  pilQ Legionella pneumophila strain Lp02

39.111

95.07

0.372

Multiple sequence alignment