Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   AhaeAN59_RS01720 Genome accession   NZ_CP031972
Coordinates   368421..368948 (+) Length   175 a.a.
NCBI ID   WP_005088514.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain AN59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 363421..373948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN59_RS01705 (AhaeAN59_01745) comM 366012..367070 (+) 1059 WP_004641327.1 pilus assembly protein PilM Machinery gene
  AhaeAN59_RS01710 (AhaeAN59_01750) pilN 367070..367714 (+) 645 WP_004641325.1 PilN domain-containing protein Machinery gene
  AhaeAN59_RS01715 (AhaeAN59_01755) pilO 367711..368421 (+) 711 WP_005088515.1 type 4a pilus biogenesis protein PilO Machinery gene
  AhaeAN59_RS01720 (AhaeAN59_01760) pilP 368421..368948 (+) 528 WP_005088514.1 pilus assembly protein PilP Machinery gene
  AhaeAN59_RS01725 (AhaeAN59_01765) pilQ 369010..371142 (+) 2133 WP_171265847.1 type IV pilus secretin PilQ family protein Machinery gene
  AhaeAN59_RS01730 (AhaeAN59_01770) aroK 371181..371723 (+) 543 WP_005087029.1 shikimate kinase AroK -
  AhaeAN59_RS01735 (AhaeAN59_01775) aroB 371744..372829 (+) 1086 WP_125502217.1 3-dehydroquinate synthase -
  AhaeAN59_RS01740 (AhaeAN59_01780) - 372845..373717 (+) 873 WP_125502215.1 hypothetical protein -

Sequence


Protein


Download         Length: 175 a.a.        Molecular weight: 19353.58 Da        Isoelectric Point: 9.3444

>NTDB_id=312997 AhaeAN59_RS01720 WP_005088514.1 368421..368948(+) (pilP) [Acinetobacter haemolyticus strain AN59]
MNNYKLLLTLFVGLGLVGCDSRIDAVNQKMAEIRNQPPLPIEPAPIFTPVPLFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFNRQPQPLESYALESLNMKGSMRGRANETIALIQTPDGQIERVQVGSYLGMNQGRIIKISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=312997 AhaeAN59_RS01720 WP_005088514.1 368421..368948(+) (pilP) [Acinetobacter haemolyticus strain AN59]
ATGAATAATTATAAATTATTACTTACATTATTCGTTGGTCTTGGGTTAGTGGGGTGTGACTCTCGCATTGATGCGGTGAA
TCAAAAAATGGCTGAAATCCGTAATCAGCCACCGTTACCGATTGAACCTGCGCCTATTTTTACGCCAGTTCCTCTATTTA
ATTACGCAGCACACCAACTGAAAAGTCCATTTATGCCAAGTTCGTTGGCGGCTGAATTAAAAATTATGGCAGGTAAACGT
GTTTATCCTAATTTTAATCGCCAGCCTCAGCCTTTAGAAAGCTATGCCTTAGAGTCTTTGAATATGAAAGGCAGTATGCG
TGGCCGTGCTAATGAAACCATTGCACTGATTCAAACACCAGATGGGCAGATTGAACGGGTGCAAGTGGGAAGCTATCTGG
GGATGAATCAGGGGCGGATTATTAAAATTAGTCCAACACAAATCGATTTGGTTGAAATCGTTCCTGATGGGCGAGAGGGT
TATGTTGAGAGACCAAGAACACTCGTTTTAATTGGACCTGCGCCGTAA

Domains


Predicted by InterproScan.

(27-170)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

82.286

100

0.823

  comL Acinetobacter baylyi ADP1

72.571

100

0.726


Multiple sequence alignment