Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D1345_RS19065 Genome accession   NZ_CP031968
Coordinates   4169364..4170587 (-) Length   407 a.a.
NCBI ID   WP_107732856.1    Uniprot ID   -
Organism   Chromobacterium rhizoryzae strain JP2-74     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4164364..4175587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1345_RS19035 (D1345_19035) tsaE 4165115..4165606 (+) 492 WP_019100894.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  D1345_RS19040 (D1345_19040) - 4165567..4166808 (+) 1242 WP_019100893.1 N-acetylmuramoyl-L-alanine amidase -
  D1345_RS19045 (D1345_19045) yacG 4166874..4167062 (-) 189 WP_019100892.1 DNA gyrase inhibitor YacG -
  D1345_RS19050 (D1345_19050) zapD 4167100..4167858 (-) 759 WP_019100891.1 cell division protein ZapD -
  D1345_RS19055 (D1345_19055) coaE 4167897..4168508 (-) 612 WP_043591353.1 dephospho-CoA kinase -
  D1345_RS19060 (D1345_19060) pilD 4168498..4169367 (-) 870 WP_043591355.1 A24 family peptidase Machinery gene
  D1345_RS19065 (D1345_19065) pilC 4169364..4170587 (-) 1224 WP_107732856.1 type II secretion system F family protein Machinery gene
  D1345_RS19070 (D1345_19070) pilF 4170659..4172365 (-) 1707 WP_019100887.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D1345_RS19075 (D1345_19075) - 4172586..4173716 (-) 1131 WP_107732857.1 porin -
  D1345_RS19080 (D1345_19080) - 4173958..4175466 (+) 1509 WP_107732858.1 deoxyribodipyrimidine photo-lyase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44690.59 Da        Isoelectric Point: 10.0725

>NTDB_id=312967 D1345_RS19065 WP_107732856.1 4169364..4170587(-) (pilC) [Chromobacterium rhizoryzae strain JP2-74]
MAVTVAKKATPGFVWEWEGKDKAGKAIRGELRAESEAVAKTQLRRQGINVVKIKRRRAGFGKRITERDITLFTRQLATMM
RAGVPLLQAFDIAAKGHSNPAVTKMLLEVRADVETGLSLAEAFRKRPLYFDKLFCNIIAAGETGGVLDSLLDKLATYKEK
VMAIKGKIKSALIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDGFVHYWWLIFGVVFGSLFGF
LYAFKRTPKLQERMDRILLRLPVIGDIIRKATIARWARTLSTLFAAGVPLVEALDSVGGASGNQVYADATKRIQNDVSTG
SSLNYSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGVLIGGLIIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=312967 D1345_RS19065 WP_107732856.1 4169364..4170587(-) (pilC) [Chromobacterium rhizoryzae strain JP2-74]
ATGGCAGTCACGGTAGCGAAAAAAGCGACGCCGGGCTTTGTCTGGGAGTGGGAAGGCAAGGACAAGGCGGGCAAGGCGAT
ACGCGGGGAATTGAGAGCGGAGTCCGAGGCGGTGGCCAAGACTCAGCTGCGGCGTCAAGGCATCAATGTCGTCAAGATCA
AGCGTCGGCGCGCCGGGTTTGGCAAGCGCATCACCGAGCGGGACATCACCCTGTTCACCCGGCAGTTGGCGACCATGATG
CGCGCCGGCGTGCCCCTGTTGCAGGCCTTCGACATCGCGGCCAAGGGCCACAGTAATCCCGCCGTGACCAAGATGCTGCT
GGAGGTGCGCGCCGACGTTGAAACCGGCTTGTCGCTGGCGGAGGCATTCCGCAAACGTCCCTTGTACTTTGACAAGCTGT
TCTGCAACATCATCGCCGCGGGCGAAACCGGCGGCGTGCTGGACTCCTTGCTGGACAAATTGGCCACTTACAAGGAAAAA
GTGATGGCGATCAAGGGTAAGATCAAGTCGGCCCTGATCTATCCGTCCGCCATTGTCGGCACCGCCTTCATCATTACCGC
CGTGATCATGATTTACGTGATTCCGGCGTTCAAGGATTTGTTCTCCAGTTTCGGCGCTAATTTGCCGGCGCCGACGCTGT
TCGTGATCTGGTTGTCGGATGGCTTTGTCCATTACTGGTGGCTGATCTTCGGGGTGGTTTTCGGCAGTCTGTTCGGCTTT
CTCTACGCCTTCAAGCGCACGCCCAAGTTGCAAGAGCGGATGGATCGCATCCTGCTGCGCCTGCCGGTGATCGGCGATAT
CATCCGCAAGGCCACCATCGCGCGCTGGGCGCGCACCTTATCCACCTTGTTCGCCGCCGGGGTGCCGCTGGTGGAAGCGC
TGGATTCGGTGGGCGGCGCCTCCGGCAACCAGGTGTACGCGGATGCCACCAAGCGGATTCAGAACGATGTCAGCACCGGT
TCCAGCCTCAACTATTCGATGCAGCGGACCGACTTGTTCCCTAATATGGTGCTGCAGATGACCTCGATTGGGGAGGAGTC
CGGTTCGTTGGACCAGATGTTGGACAAGGTGGCAGATTTTTACGAAGAAGAAGTCGACAATGCGGTTGCCGCGCTGTCCA
GTTTGCTGGAGCCGGCCATCATGGTGATTCTGGGGGTCTTGATCGGCGGTTTGATCATTGCGATGTATATGCCGATTTTC
AAAATGGGGCAGGTGGTTGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.208

99.263

0.538
  pilC Pseudomonas stutzeri DSM 10701

53.086

99.509

0.528
  pilG Neisseria gonorrhoeae MS11

53.453

96.069

0.514
  pilG Neisseria meningitidis 44/76-A

53.197

96.069

0.511
  pilC Acinetobacter baylyi ADP1

50

99.754

0.499
  pilC Acinetobacter baumannii D1279779

48.889

99.509

0.486
  pilC Vibrio campbellii strain DS40M4

39.098

98.034

0.383
  pilC Vibrio cholerae strain A1552

38.177

99.754

0.381
  pilC Thermus thermophilus HB27

36.842

98.034

0.361

Multiple sequence alignment