Detailed information NTG0312966

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D1345_RS19060
• Genome accession: NZ_CP031968
• Coordinates: 4168498..4169367 (-)
• Length: 289 a.a.
• NCBI ID: WP_043591355.1
• Uniprot ID: A0AAD0RYW3
• Organism: Chromobacterium rhizoryzae strain JP2-74
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4163498..4174367

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D1345_RS19025 (D1345_19025)	-	4163620..4164036 (+)	417	WP_019100896.1	MaoC family dehydratase	-
D1345_RS19030 (D1345_19030)	queG	4164040..4165122 (-)	1083	WP_324606831.1	tRNA epoxyqueuosine(34) reductase QueG	-
D1345_RS19035 (D1345_19035)	tsaE	4165115..4165606 (+)	492	WP_019100894.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	-
D1345_RS19040 (D1345_19040)	-	4165567..4166808 (+)	1242	WP_019100893.1	N-acetylmuramoyl-L-alanine amidase	-
D1345_RS19045 (D1345_19045)	yacG	4166874..4167062 (-)	189	WP_019100892.1	DNA gyrase inhibitor YacG	-
D1345_RS19050 (D1345_19050)	zapD	4167100..4167858 (-)	759	WP_019100891.1	cell division protein ZapD	-
D1345_RS19055 (D1345_19055)	coaE	4167897..4168508 (-)	612	WP_043591353.1	dephospho-CoA kinase	-
D1345_RS19060 (D1345_19060)	pilD	4168498..4169367 (-)	870	WP_043591355.1	A24 family peptidase	Machinery gene
D1345_RS19065 (D1345_19065)	pilC	4169364..4170587 (-)	1224	WP_107732856.1	type II secretion system F family protein	Machinery gene
D1345_RS19070 (D1345_19070)	pilF	4170659..4172365 (-)	1707	WP_019100887.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D1345_RS19075 (D1345_19075)	-	4172586..4173716 (-)	1131	WP_107732857.1	porin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31917.84 Da
• Isoelectric Point: 7.2567

>NTDB_id=312966 D1345_RS19060 WP_043591355.1 4168498..4169367(-) (pilD) [Chromobacterium rhizoryzae strain JP2-74]
MIEEWRWIAGSYPLAFAGAALALGLLVGSFLNVIIHRLPKMLEAEWRRNCVDCLQLEEDETSEPYNLMRPASHCPQCRAA
VRPWQNIPVLSFVLLRGRCGSCRAKIPWRYPVVELSTGLLFAFLAWRFGWSEQLPAYMGLTAVLLALTFIDADTQLLPDN
LTLPLLWGGLLFNLLTGTVPLADAVIGAMAGYLCLWLLFHGFKLATGKEGMGYGDFKLLAALGAWLGWTLLPLVILLSSL
VGAVVGVILILLSKHGRGQPLPFGPYLAAAGWIALIWGQDIVNWYLHAY

Nucleotide

• Length: 870 bp

>NTDB_id=312966 D1345_RS19060 WP_043591355.1 4168498..4169367(-) (pilD) [Chromobacterium rhizoryzae strain JP2-74]
ATGATTGAGGAGTGGCGCTGGATCGCCGGCTCGTATCCGCTGGCTTTCGCCGGCGCGGCGCTGGCGCTGGGTTTGTTGGT
TGGCAGTTTTCTGAATGTGATCATTCATCGCTTGCCCAAGATGCTGGAGGCCGAGTGGCGGCGCAATTGCGTTGATTGTC
TGCAGTTGGAAGAGGACGAGACGTCCGAGCCCTACAACTTAATGCGGCCTGCCTCGCACTGCCCGCAATGCCGGGCCGCG
GTGCGTCCGTGGCAGAATATCCCGGTATTGAGCTTTGTGTTGCTGCGCGGACGCTGCGGCAGTTGCCGAGCCAAGATCCC
TTGGCGCTATCCGGTCGTGGAGCTGTCGACTGGGCTGTTGTTCGCTTTCCTGGCCTGGCGTTTCGGCTGGTCGGAACAGC
TGCCGGCCTATATGGGTTTGACCGCGGTGCTGCTGGCCCTGACTTTTATCGACGCGGATACGCAGCTGCTGCCGGACAAC
CTGACTTTGCCCTTGCTGTGGGGGGGCTTGTTATTCAATTTGCTGACCGGCACCGTGCCGCTGGCCGACGCGGTGATAGG
CGCGATGGCGGGCTATCTGTGCCTGTGGTTGCTGTTTCACGGCTTCAAGCTGGCCACCGGCAAGGAGGGCATGGGCTATG
GCGACTTCAAGCTGCTGGCCGCTTTGGGCGCGTGGTTGGGGTGGACTTTGCTGCCCTTGGTGATTTTGCTGTCTTCGCTG
GTGGGGGCCGTGGTGGGCGTGATCTTGATTTTGCTGTCCAAGCACGGACGCGGTCAGCCGCTGCCGTTTGGCCCTTATCT
TGCGGCCGCCGGCTGGATCGCTTTGATCTGGGGGCAGGACATTGTGAATTGGTATTTGCATGCCTATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (23-128)

• Type IV leader peptidase family (Peptidase_A24) (140-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	54.122	96.54	0.522
pilD	Vibrio cholerae strain A1552	52.128	97.578	0.509
pilD	Neisseria gonorrhoeae MS11	52.768	93.772	0.495
pilD	Acinetobacter baumannii D1279779	49.814	93.08	0.464
pilD	Acinetobacter nosocomialis M2	49.071	93.08	0.457