Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | LL223_RS02505 | Genome accession | NZ_CP031926 |
| Coordinates | 469803..470192 (+) | Length | 129 a.a. |
| NCBI ID | WP_010905314.1 | Uniprot ID | S6EQX8 |
| Organism | Lactococcus lactis subsp. lactis strain 223 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 464803..475192
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL223_RS02480 (LL223_0471) | pepA | 465685..466752 (-) | 1068 | WP_014570380.1 | glutamyl aminopeptidase | - |
| LL223_RS02485 (LL223_0472) | - | 466855..467139 (+) | 285 | WP_003131596.1 | hypothetical protein | - |
| LL223_RS02490 (LL223_0473) | - | 467181..467498 (+) | 318 | WP_003131595.1 | thioredoxin family protein | - |
| LL223_RS02495 (LL223_0474) | ytpR | 467584..468210 (+) | 627 | WP_003131594.1 | YtpR family tRNA-binding protein | - |
| LL223_RS02500 (LL223_0475) | nox | 468373..469713 (+) | 1341 | WP_021214845.1 | H2O-forming NADH oxidase | - |
| LL223_RS02505 (LL223_0476) | ssbB | 469803..470192 (+) | 390 | WP_010905314.1 | single-stranded DNA-binding protein | Machinery gene |
| LL223_RS02510 (LL223_0477) | groES | 470312..470596 (+) | 285 | WP_003131589.1 | co-chaperone GroES | - |
| LL223_RS02515 (LL223_0478) | groL | 470684..472312 (+) | 1629 | WP_003131585.1 | chaperonin GroEL | - |
| LL223_RS02520 (LL223_0479) | - | 472358..473170 (-) | 813 | WP_003131583.1 | MBL fold metallo-hydrolase | - |
| LL223_RS02525 (LL223_0480) | - | 473341..474783 (-) | 1443 | WP_010905315.1 | cell wall metabolism sensor histidine kinase WalK | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14672.73 Da Isoelectric Point: 8.3705
>NTDB_id=312744 LL223_RS02505 WP_010905314.1 469803..470192(+) (ssbB) [Lactococcus lactis subsp. lactis strain 223]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=312744 LL223_RS02505 WP_010905314.1 469803..470192(+) (ssbB) [Lactococcus lactis subsp. lactis strain 223]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
90.698 |
100 |
0.907 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60.769 |
100 |
0.612 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.923 |
100 |
0.574 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis SK321 |
56.154 |
100 |
0.566 |
| ssbA | Streptococcus mutans UA159 |
55.385 |
100 |
0.558 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
43.75 |
86.822 |
0.38 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
44.762 |
81.395 |
0.364 |