Detailed information NTG0312354

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: D1O36_RS09030
• Genome accession: NZ_CP031881
• Coordinates: 1684118..1684510 (-)
• Length: 130 a.a.
• NCBI ID: WP_014608736.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain ST106
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1679118..1689510

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D1O36_RS08995 (D1O36_09020)	dapD	1679420..1680118 (-)	699	WP_002951996.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
D1O36_RS11260 (D1O36_09025)	-	1680204..1680958 (-)	755	Protein_1690	HAD family hydrolase	-
D1O36_RS09005 (D1O36_09030)	-	1681073..1681906 (-)	834	WP_014608733.1	putative RNA methyltransferase	-
D1O36_RS09015 (D1O36_09040)	-	1682275..1682442 (+)	168	WP_002945733.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
D1O36_RS11265 (D1O36_09045)	-	1682495..1682758 (+)	264	WP_011681674.1	hypothetical protein	-
D1O36_RS09025 (D1O36_09050)	tadA	1682858..1683358 (-)	501	WP_116920361.1	tRNA adenosine(34) deaminase TadA	-
D1O36_RS09030 (D1O36_09055)	ssbA	1684118..1684510 (-)	393	WP_014608736.1	single-stranded DNA-binding protein	Machinery gene
D1O36_RS09035 (D1O36_09060)	-	1684716..1684943 (-)	228	WP_011226611.1	sulfurtransferase TusA family protein	-
D1O36_RS09040 (D1O36_09065)	-	1684958..1685989 (-)	1032	WP_134973502.1	YeeE/YedE family protein	-
D1O36_RS09045 (D1O36_09070)	ytpR	1686127..1686750 (-)	624	WP_082309147.1	YtpR family tRNA-binding protein	-
D1O36_RS09050 (D1O36_09075)	-	1686760..1687074 (-)	315	WP_002945230.1	thioredoxin family protein	-
D1O36_RS09055 (D1O36_09080)	-	1687071..1687355 (-)	285	WP_002952020.1	DUF4651 domain-containing protein	-
D1O36_RS09060 (D1O36_09085)	pepA	1687455..1688522 (+)	1068	WP_134973503.1	glutamyl aminopeptidase	-
D1O36_RS09065 (D1O36_09090)	proC	1688538..1689308 (+)	771	WP_014727718.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14803.78 Da
• Isoelectric Point: 5.9275

>NTDB_id=312354 D1O36_RS09030 WP_014608736.1 1684118..1684510(-) (ssbA) [Streptococcus thermophilus strain ST106]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKMQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=312354 D1O36_RS09030 WP_014608736.1 1684118..1684510(-) (ssbA) [Streptococcus thermophilus strain ST106]
ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGATGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT
GGGGCCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	79.389	100	0.8
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.809	100	0.754
ssbB/cilA	Streptococcus mitis SK321	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae R6	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae Rx1	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae D39	74.046	100	0.746
ssbB/cilA	Streptococcus mitis NCTC 12261	72.519	100	0.731
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377