Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HYN24_RS02760 Genome accession   NZ_CP031842
Coordinates   552883..554109 (-) Length   408 a.a.
NCBI ID   WP_117607857.1    Uniprot ID   A0A3B7A714
Organism   Dechloromonas sp. HYN0024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 547883..559109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN24_RS02725 (HYN24_02725) nudB 548012..548467 (-) 456 WP_117607850.1 dihydroneopterin triphosphate diphosphatase -
  HYN24_RS02730 (HYN24_02730) - 548464..548892 (-) 429 WP_117607851.1 barstar family protein -
  HYN24_RS02735 (HYN24_02735) - 548903..549262 (-) 360 WP_117607852.1 ribonuclease domain-containing protein -
  HYN24_RS02740 (HYN24_02740) aspS 549272..551071 (-) 1800 WP_117607853.1 aspartate--tRNA ligase -
  HYN24_RS02745 (HYN24_02745) - 551089..551703 (-) 615 WP_117607854.1 DUF502 domain-containing protein -
  HYN24_RS02750 (HYN24_02750) - 551703..551957 (-) 255 WP_117607855.1 FmdB family zinc ribbon protein -
  HYN24_RS02755 (HYN24_02755) pilD 552029..552883 (-) 855 WP_117607856.1 A24 family peptidase Machinery gene
  HYN24_RS02760 (HYN24_02760) pilC 552883..554109 (-) 1227 WP_117607857.1 type II secretion system F family protein Machinery gene
  HYN24_RS02765 (HYN24_02765) pilB 554125..555840 (-) 1716 WP_117607858.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HYN24_RS02770 (HYN24_02770) - 556076..557347 (-) 1272 WP_117607859.1 HlyC/CorC family transporter -
  HYN24_RS02775 (HYN24_02775) - 557357..558196 (-) 840 WP_117607860.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44530.44 Da        Isoelectric Point: 9.9374

>NTDB_id=311764 HYN24_RS02760 WP_117607857.1 552883..554109(-) (pilC) [Dechloromonas sp. HYN0024]
MATAARNRASAVKESTFLWEGKNKDGKTVRGEMRVASESVVQTMLRRQGVTNAKVKKVRFKTGGTITEKDISLFTRQLAT
MMKSGVPLLQSFDIVGRGHSNPAVGKLLLDIKSDVETGSSLSQAFRKFPLQFDALYCNLVAAGEQAGILDTLLDRLATYK
EKILAIKGKIKSALFYPIAVLVVAFIITAVIMIFVIPAFKDVFKSFGADLPAPTLFVIALSDFFVAYWWAIFGILGGGLY
AFLESWKRSEKIQMAMDRMLLRMPIFGDIVRKSVIARWTRTLATMFAAGVPLVESLESVGGAAGNHVYKVATRQIQSEVS
TGVNLTTAMQNTNIFPNMVIQMVSIGEESGALDSMLSKVADFFEQEVDDAVDAMSSLMEPIIMVVLGTLIGGMVVAMYLP
IFKIGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=311764 HYN24_RS02760 WP_117607857.1 552883..554109(-) (pilC) [Dechloromonas sp. HYN0024]
ATGGCTACCGCCGCAAGAAATAGGGCCTCGGCAGTCAAGGAAAGCACTTTCCTCTGGGAAGGCAAGAATAAAGACGGCAA
AACCGTACGTGGCGAAATGCGCGTGGCCAGCGAATCGGTCGTGCAAACGATGCTGCGTCGACAGGGCGTGACCAACGCCA
AGGTCAAGAAAGTTCGCTTCAAGACCGGTGGCACGATAACCGAGAAGGATATTTCGCTGTTCACCCGCCAGCTGGCGACG
ATGATGAAATCCGGCGTTCCCTTGTTGCAGTCCTTCGACATCGTTGGCCGTGGCCACTCCAACCCCGCTGTCGGCAAACT
GTTGCTTGATATCAAGTCCGATGTCGAAACCGGCAGTTCGCTGTCGCAAGCTTTCCGCAAATTTCCGCTGCAGTTCGATG
CGCTGTATTGCAACCTGGTCGCCGCCGGTGAGCAGGCCGGTATTCTCGATACCCTGCTTGACCGCCTCGCCACCTACAAG
GAAAAGATCCTGGCCATCAAGGGCAAGATCAAATCGGCCCTCTTCTACCCGATTGCCGTCCTTGTCGTCGCCTTCATCAT
CACCGCCGTCATCATGATCTTCGTGATCCCAGCCTTCAAGGACGTGTTCAAGTCCTTTGGTGCCGATCTGCCGGCCCCAA
CCCTCTTCGTCATCGCCCTTTCCGACTTTTTCGTGGCGTACTGGTGGGCCATTTTCGGCATTCTCGGCGGCGGCTTGTAC
GCCTTCCTGGAAAGCTGGAAGCGTTCCGAGAAAATCCAGATGGCGATGGATCGTATGCTCCTGCGCATGCCCATTTTCGG
CGATATTGTCCGCAAGTCGGTCATTGCGCGCTGGACCCGCACCCTCGCCACCATGTTCGCCGCCGGCGTACCGCTGGTCG
AATCCCTCGAGTCGGTCGGTGGCGCGGCCGGCAACCACGTCTACAAGGTCGCCACGCGCCAGATCCAGAGCGAAGTATCG
ACTGGCGTCAATCTGACCACAGCGATGCAGAACACCAACATCTTCCCCAACATGGTGATCCAGATGGTCTCCATTGGCGA
AGAGTCAGGCGCTCTCGACTCGATGCTATCGAAGGTGGCCGACTTTTTCGAACAGGAAGTCGACGATGCCGTCGATGCCA
TGTCCAGCCTCATGGAACCGATCATCATGGTGGTTCTTGGTACGCTCATCGGCGGCATGGTCGTTGCCATGTATCTGCCT
ATCTTCAAGATTGGATCCGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7A714

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.364

98.284

0.534
  pilC Legionella pneumophila strain ERS1305867

54.408

97.304

0.529
  pilG Neisseria gonorrhoeae MS11

52.882

97.794

0.517
  pilG Neisseria meningitidis 44/76-A

52.632

97.794

0.515
  pilC Acinetobacter baumannii D1279779

51

98.039

0.5
  pilC Acinetobacter baylyi ADP1

49.622

97.304

0.483
  pilC Vibrio cholerae strain A1552

42

98.039

0.412
  pilC Vibrio campbellii strain DS40M4

39.152

98.284

0.385
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment