Detailed information NTG0311763

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HYN24_RS02755
• Genome accession: NZ_CP031842
• Coordinates: 552029..552883 (-)
• Length: 284 a.a.
• NCBI ID: WP_117607856.1
• Uniprot ID: A0A3B7A2M7
• Organism: Dechloromonas sp. HYN0024
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 547029..557883

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HYN24_RS02720 (HYN24_02720)	argB	547044..547931 (-)	888	WP_205421428.1	acetylglutamate kinase	-
HYN24_RS02725 (HYN24_02725)	nudB	548012..548467 (-)	456	WP_117607850.1	dihydroneopterin triphosphate diphosphatase	-
HYN24_RS02730 (HYN24_02730)	-	548464..548892 (-)	429	WP_117607851.1	barstar family protein	-
HYN24_RS02735 (HYN24_02735)	-	548903..549262 (-)	360	WP_117607852.1	ribonuclease domain-containing protein	-
HYN24_RS02740 (HYN24_02740)	aspS	549272..551071 (-)	1800	WP_117607853.1	aspartate--tRNA ligase	-
HYN24_RS02745 (HYN24_02745)	-	551089..551703 (-)	615	WP_117607854.1	DUF502 domain-containing protein	-
HYN24_RS02750 (HYN24_02750)	-	551703..551957 (-)	255	WP_117607855.1	FmdB family zinc ribbon protein	-
HYN24_RS02755 (HYN24_02755)	pilD	552029..552883 (-)	855	WP_117607856.1	A24 family peptidase	Machinery gene
HYN24_RS02760 (HYN24_02760)	pilC	552883..554109 (-)	1227	WP_117607857.1	type II secretion system F family protein	Machinery gene
HYN24_RS02765 (HYN24_02765)	pilB	554125..555840 (-)	1716	WP_117607858.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HYN24_RS02770 (HYN24_02770)	-	556076..557347 (-)	1272	WP_117607859.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 284 a.a.
• Molecular weight: 30040.59 Da
• Isoelectric Point: 6.9297

>NTDB_id=311763 HYN24_RS02755 WP_117607856.1 552029..552883(-) (pilD) [Dechloromonas sp. HYN0024]
MLPETLGGLAAVAGLLGVCVGSFLNVVIHRLPKMMEQEWHAQCADLRGESPPPAEAPLSLAKPRSRCPDCGHQITALENI
PLISYLLILRGKCSACQAPISLRYPIIEALTGLLSAYVAWHFGPTLQGAGALALVWALIALAAIDLDTQLLPDSITLPLL
WLGLGFNLWATYTDLSSAVVGAMLGYLALWSVFWLFKLATGKEGMGYGDFKLLAALGAWLGWSMLPAIILLSSVVGAAVG
ITLIVAARHGRNVPIPFGPYLAAAGGIALFWGESITRSYLGLIG

Nucleotide

• Length: 855 bp

>NTDB_id=311763 HYN24_RS02755 WP_117607856.1 552029..552883(-) (pilD) [Dechloromonas sp. HYN0024]
ATGCTCCCCGAAACCCTGGGCGGTCTGGCCGCCGTGGCTGGGCTGCTCGGCGTTTGCGTCGGCAGCTTCCTCAACGTGGT
GATTCACCGCCTGCCCAAAATGATGGAGCAGGAATGGCACGCACAATGTGCCGACTTGCGTGGGGAATCACCGCCGCCCG
CAGAAGCCCCGCTGTCGCTGGCCAAGCCCCGCTCGCGCTGCCCGGATTGCGGCCACCAGATCACCGCTCTCGAAAACATT
CCACTGATCAGCTATCTGTTGATCCTCAGGGGTAAATGCTCGGCTTGCCAGGCCCCGATTTCCCTGCGCTACCCGATTAT
CGAAGCACTGACCGGCCTGCTCTCTGCCTATGTCGCCTGGCATTTTGGCCCGACCCTTCAGGGGGCCGGCGCACTAGCCC
TGGTCTGGGCGCTCATCGCACTCGCCGCGATCGATCTTGATACGCAGCTTCTGCCCGACTCGATCACCCTGCCCTTGCTC
TGGCTGGGCCTCGGCTTCAATCTGTGGGCAACCTATACCGACCTGTCGTCCGCCGTCGTCGGTGCCATGCTCGGTTATCT
CGCCCTGTGGAGCGTTTTTTGGCTGTTCAAGCTGGCTACCGGCAAGGAAGGCATGGGCTATGGTGACTTCAAACTCCTGG
CCGCCCTTGGTGCCTGGCTGGGCTGGTCCATGCTGCCGGCCATCATTCTGCTCTCCTCGGTGGTCGGTGCCGCCGTTGGT
ATCACGCTGATCGTTGCCGCCCGCCACGGGCGCAACGTCCCGATCCCTTTTGGCCCCTACCTTGCCGCAGCTGGCGGCAT
CGCCCTCTTCTGGGGCGAATCGATCACACGCAGCTATCTCGGCCTGATCGGTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-122)

• Type IV leader peptidase family (Peptidase_A24) (133-241)

3D structure

• AlphaFold DB: A0A3B7A2M7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	54.48	98.239	0.535
pilD	Acinetobacter baumannii D1279779	54.48	98.239	0.535
pilD	Vibrio cholerae strain A1552	55.109	96.479	0.532
pilD	Vibrio campbellii strain DS40M4	54.182	96.831	0.525
pilD	Neisseria gonorrhoeae MS11	50	94.366	0.472