Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D1O27_RS06595 | Genome accession | NZ_CP031839 |
| Coordinates | 1212703..1213128 (+) | Length | 141 a.a. |
| NCBI ID | WP_117346059.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain NX-T55 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1207703..1218128
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1O27_RS06525 (D1O27_06525) | - | 1208489..1208707 (+) | 219 | WP_001001383.1 | hypothetical protein | - |
| D1O27_RS06530 (D1O27_06530) | - | 1208757..1208900 (+) | 144 | WP_000939498.1 | hypothetical protein | - |
| D1O27_RS15090 | - | 1208992..1209180 (-) | 189 | Protein_1193 | uracil-DNA glycosylase | - |
| D1O27_RS06540 (D1O27_06540) | - | 1209250..1209447 (+) | 198 | WP_001148860.1 | hypothetical protein | - |
| D1O27_RS06545 (D1O27_06545) | - | 1209434..1209814 (-) | 381 | WP_000773059.1 | DUF2513 domain-containing protein | - |
| D1O27_RS06550 (D1O27_06550) | - | 1209881..1210126 (+) | 246 | WP_001025401.1 | DUF2829 domain-containing protein | - |
| D1O27_RS06555 (D1O27_06555) | - | 1210095..1210460 (-) | 366 | WP_001128433.1 | hypothetical protein | - |
| D1O27_RS06560 (D1O27_06560) | - | 1210515..1210730 (+) | 216 | WP_001097552.1 | hypothetical protein | - |
| D1O27_RS06565 (D1O27_06565) | - | 1210757..1211020 (+) | 264 | WP_001124196.1 | helix-turn-helix domain-containing protein | - |
| D1O27_RS06570 (D1O27_06570) | - | 1211033..1211194 (+) | 162 | WP_001285948.1 | DUF1270 domain-containing protein | - |
| D1O27_RS06575 (D1O27_06575) | - | 1211289..1211591 (+) | 303 | WP_001608484.1 | DUF2482 family protein | - |
| D1O27_RS06580 (D1O27_06580) | - | 1211596..1211856 (+) | 261 | WP_031584888.1 | DUF1108 family protein | - |
| D1O27_RS06585 (D1O27_06585) | - | 1211866..1212087 (+) | 222 | WP_000815401.1 | DUF2483 family protein | - |
| D1O27_RS06590 (D1O27_06590) | - | 1212080..1212703 (+) | 624 | WP_047554413.1 | DUF1071 domain-containing protein | - |
| D1O27_RS06595 (D1O27_06595) | ssb | 1212703..1213128 (+) | 426 | WP_117346059.1 | single-stranded DNA-binding protein | Machinery gene |
| D1O27_RS06600 (D1O27_06600) | - | 1213139..1213690 (+) | 552 | WP_001004506.1 | NUMOD4 domain-containing protein | - |
| D1O27_RS06605 (D1O27_06605) | - | 1213691..1214365 (+) | 675 | WP_117346060.1 | putative HNHc nuclease | - |
| D1O27_RS06610 (D1O27_06610) | - | 1214358..1215110 (+) | 753 | WP_031584871.1 | DnaD domain protein | - |
| D1O27_RS06615 (D1O27_06615) | - | 1215110..1215466 (+) | 357 | WP_001132247.1 | hypothetical protein | - |
| D1O27_RS06620 (D1O27_06620) | - | 1215463..1216704 (+) | 1242 | WP_001106171.1 | DnaB helicase C-terminal domain-containing protein | - |
| D1O27_RS06625 (D1O27_06625) | - | 1216701..1216916 (+) | 216 | WP_031584864.1 | hypothetical protein | - |
| D1O27_RS06630 (D1O27_06630) | - | 1216919..1217140 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| D1O27_RS06635 (D1O27_06635) | - | 1217150..1217557 (+) | 408 | WP_029549553.1 | RusA family crossover junction endodeoxyribonuclease | - |
| D1O27_RS06640 (D1O27_06640) | - | 1217557..1217742 (+) | 186 | WP_117346061.1 | DUF3113 family protein | - |
| D1O27_RS06645 (D1O27_06645) | - | 1217743..1218105 (+) | 363 | WP_000536051.1 | SA1788 family PVL leukocidin-associated protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15893.56 Da Isoelectric Point: 8.4588
>NTDB_id=311737 D1O27_RS06595 WP_117346059.1 1212703..1213128(+) (ssb) [Staphylococcus aureus strain NX-T55]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADNVQFLEPKNNNQQQNNNYQQQRQTQTGNNPFDNNADSIEDLPF
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADNVQFLEPKNNNQQQNNNYQQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=311737 D1O27_RS06595 WP_117346059.1 1212703..1213128(+) (ssb) [Staphylococcus aureus strain NX-T55]
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGTACGCCAAATGGCGTAAATGTAGG
GACGTTCACATTAGCGGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGACTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGGTCACTGGCAGGCGTAGACGGACGACTACAAACAAGA
AGCTACGAAAACAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAATGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGTACGCCAAATGGCGTAAATGTAGG
GACGTTCACATTAGCGGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGACTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGGTCACTGGCAGGCGTAGACGGACGACTACAAACAAGA
AGCTACGAAAACAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAATGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.631 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
80.374 |
75.887 |
0.61 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
75.177 |
0.447 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.844 |
100 |
0.418 |
| ssbA | Streptococcus mutans UA159 |
41.135 |
100 |
0.411 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.915 |
83.688 |
0.376 |