Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   DDV21_RS00840 Genome accession   NZ_CP031733
Coordinates   136644..137039 (+) Length   131 a.a.
NCBI ID   WP_116878356.1    Uniprot ID   A0A372KL27
Organism   Streptococcus chenjunshii strain Z15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 131644..142039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV21_RS00815 (DDV21_000815) - 132084..132368 (+) 285 WP_116878361.1 DUF4651 domain-containing protein -
  DDV21_RS00820 (DDV21_000820) ytpR 132434..133060 (+) 627 WP_116878360.1 YtpR family tRNA-binding protein -
  DDV21_RS00825 (DDV21_000825) - 133255..134190 (+) 936 WP_116878359.1 sugar phosphate isomerase/epimerase family protein -
  DDV21_RS00830 (DDV21_000830) - 134215..135585 (+) 1371 WP_116878358.1 PTS transporter subunit EIIC -
  DDV21_RS00835 (DDV21_000835) - 135648..136403 (+) 756 WP_116878357.1 DeoR/GlpR family DNA-binding transcription regulator -
  DDV21_RS00840 (DDV21_000840) ssbB 136644..137039 (+) 396 WP_116878356.1 single-stranded DNA-binding protein Machinery gene
  DDV21_RS00845 (DDV21_000845) - 137642..138613 (+) 972 WP_116878355.1 sugar ABC transporter substrate-binding protein -
  DDV21_RS00850 (DDV21_000850) - 138613..139932 (+) 1320 WP_116878354.1 sensor histidine kinase -
  DDV21_RS00855 (DDV21_000855) - 139925..140602 (+) 678 WP_116878353.1 response regulator transcription factor -
  DDV21_RS00860 (DDV21_000860) - 140595..141911 (+) 1317 WP_116878352.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14986.14 Da        Isoelectric Point: 9.4818

>NTDB_id=310817 DDV21_RS00840 WP_116878356.1 136644..137039(+) (ssbB) [Streptococcus chenjunshii strain Z15]
MYNKVIIIGRLTAMPELVKTTNNKSVTHVTMAVNRRFKKQNGERTADFINIVIWGRLAETLVSYAGKGSLISLDGELRTR
RYEKDTQTHYVTEVLCHSFQLLESRAQRALRENNSTSNLTDLVLAEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=310817 DDV21_RS00840 WP_116878356.1 136644..137039(+) (ssbB) [Streptococcus chenjunshii strain Z15]
ATGTATAACAAAGTTATTATTATTGGACGGCTGACGGCGATGCCTGAGCTTGTTAAAACAACAAATAATAAATCTGTCAC
GCATGTCACTATGGCGGTTAACCGTCGATTTAAAAAGCAGAACGGTGAACGGACTGCTGATTTTATTAATATTGTTATTT
GGGGACGTTTAGCTGAAACGCTGGTTTCTTACGCCGGCAAGGGCAGTCTTATCTCACTGGATGGGGAACTGCGTACGCGC
AGATATGAAAAAGATACACAAACGCATTATGTCACTGAAGTGCTCTGCCATTCTTTCCAGCTTTTGGAGAGCAGGGCACA
GCGGGCGCTGAGGGAAAATAATAGTACAAGCAATTTGACGGATTTAGTTTTAGCAGAGGAAGAGCTGCCTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372KL27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

80.153

100

0.802
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae Rx1

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae D39

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae R6

74.046

100

0.74
  ssbB/cilA Streptococcus mitis SK321

73.282

100

0.733
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

65.179

85.496

0.557
  ssb Latilactobacillus sakei subsp. sakei 23K

45.763

90.076

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405

Multiple sequence alignment