Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D0B54_RS18915 Genome accession   NZ_CP031704
Coordinates   4198064..4199239 (+) Length   391 a.a.
NCBI ID   WP_240433655.1    Uniprot ID   -
Organism   Solimonas sp. K1W22B-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4193064..4204239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0B54_RS18890 (D0B54_18890) - 4193095..4193763 (+) 669 WP_205527178.1 class I SAM-dependent methyltransferase -
  D0B54_RS18895 (D0B54_18895) - 4193763..4194164 (+) 402 WP_117293097.1 GtrA family protein -
  D0B54_RS18900 (D0B54_18900) - 4194161..4195129 (+) 969 WP_117293099.1 fatty acid desaturase -
  D0B54_RS18905 (D0B54_18905) - 4195147..4196127 (+) 981 WP_162932562.1 class I SAM-dependent methyltransferase -
  D0B54_RS18910 (D0B54_18910) pilB 4196222..4197955 (+) 1734 WP_117293103.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0B54_RS18915 (D0B54_18915) pilC 4198064..4199239 (+) 1176 WP_240433655.1 type II secretion system F family protein Machinery gene
  D0B54_RS18920 (D0B54_18920) pilD 4199264..4200124 (+) 861 WP_117293107.1 A24 family peptidase Machinery gene
  D0B54_RS18925 (D0B54_18925) coaE 4200124..4200771 (+) 648 WP_117293109.1 dephospho-CoA kinase -
  D0B54_RS18930 (D0B54_18930) zapD 4200807..4201583 (+) 777 WP_117293111.1 cell division protein ZapD -
  D0B54_RS18935 (D0B54_18935) - 4201580..4201786 (+) 207 WP_162932563.1 DNA gyrase inhibitor YacG -
  D0B54_RS18940 (D0B54_18940) - 4201899..4202840 (-) 942 WP_162932564.1 Nudix family hydrolase -
  D0B54_RS18945 (D0B54_18945) argJ 4202837..4204057 (-) 1221 WP_117293115.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 42729.26 Da        Isoelectric Point: 9.6899

>NTDB_id=310638 D0B54_RS18915 WP_240433655.1 4198064..4199239(+) (pilC) [Solimonas sp. K1W22B-7]
MDRKGQRVKGQSVGPSESMIKTQLRKQGINPTSVRQQSALFAAGKKKSITATDISIFSRQMATMMAAGVPLVQALEIVGR
GHENASMQDMILGIKSNIEGGNSFASSLAKYPLQFDDLFVNLVDAGEKSGALETLLEKIATYKEKTELIKKKVKKALTYP
TAVLVVAFVVTGILLYFVVPTFAELFQGFGADLPAFTKFVIGMSEFIQAKWWLILLIVGGTGYGFFEAKRRSRNFRRFMD
RVMLKVPIVGDILYKSAIARFNRTLSTMFAAGVPLVEAMDSVARAAGNIVFEEAIFIMRDRVSTGQQLQLTMQQSGLFPN
MAVQMVAIGEESGALDEMCAKVADFYEAEVDAMVDALSSLLEPMIMAFLGIVVGGLVTAMYLPIFKLGQAI

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=310638 D0B54_RS18915 WP_240433655.1 4198064..4199239(+) (pilC) [Solimonas sp. K1W22B-7]
ATGGACCGCAAGGGTCAGCGCGTCAAGGGGCAGAGCGTCGGCCCCAGCGAGAGCATGATCAAGACCCAGCTGCGCAAGCA
GGGCATCAATCCCACTTCGGTGCGGCAGCAGTCGGCGCTGTTCGCCGCCGGCAAGAAGAAATCGATCACCGCCACCGACA
TCTCCATCTTCAGCCGTCAGATGGCGACGATGATGGCCGCCGGCGTGCCGCTGGTGCAGGCACTGGAAATCGTCGGCCGC
GGACATGAAAACGCCTCGATGCAGGACATGATCCTGGGCATCAAGAGCAACATCGAGGGCGGCAACTCCTTCGCCTCCAG
CCTGGCCAAGTACCCCTTGCAGTTCGACGACCTGTTCGTCAACCTGGTGGACGCCGGCGAGAAATCCGGCGCGCTGGAAA
CGCTGCTGGAAAAGATCGCCACCTACAAAGAAAAGACGGAGTTGATCAAGAAGAAGGTCAAGAAGGCCTTGACCTATCCG
ACGGCGGTGCTGGTCGTCGCCTTCGTCGTCACCGGCATTCTTCTGTACTTCGTCGTGCCGACCTTCGCCGAACTGTTCCA
GGGCTTCGGCGCCGACCTGCCGGCCTTCACCAAGTTCGTCATCGGCATGTCCGAGTTCATCCAGGCGAAATGGTGGCTGA
TCCTGCTGATCGTCGGCGGCACCGGCTACGGCTTCTTCGAAGCGAAGCGCCGTTCCAGGAACTTCCGGCGTTTCATGGAC
CGCGTCATGCTCAAGGTGCCGATCGTCGGCGACATCCTCTACAAGTCCGCCATCGCCCGCTTCAACCGCACCCTCTCCAC
CATGTTTGCCGCCGGCGTGCCGCTGGTGGAAGCGATGGACTCGGTGGCCAGGGCCGCCGGCAACATCGTCTTCGAGGAAG
CCATCTTCATCATGCGCGACCGTGTCTCCACCGGCCAGCAGCTGCAGCTGACCATGCAGCAGTCGGGCCTGTTCCCCAAC
ATGGCGGTGCAGATGGTCGCCATCGGCGAGGAATCCGGCGCCCTGGACGAAATGTGCGCCAAGGTCGCCGACTTCTACGA
AGCGGAGGTCGACGCGATGGTCGACGCCCTGTCGAGCCTGCTGGAGCCGATGATCATGGCCTTCCTCGGCATCGTCGTCG
GCGGCCTGGTCACCGCCATGTACCTGCCGATCTTCAAGCTCGGCCAGGCAATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(263-383)

Type II secretion system (T2SS), protein F (T2SSF)

(57-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.184

100

0.593
  pilC Legionella pneumophila strain ERS1305867

58.056

100

0.581
  pilC Acinetobacter baylyi ADP1

54.592

100

0.547
  pilC Acinetobacter baumannii D1279779

54.082

100

0.542
  pilG Neisseria gonorrhoeae MS11

46.094

98.21

0.453
  pilG Neisseria meningitidis 44/76-A

46.094

98.21

0.453
  pilC Vibrio cholerae strain A1552

41.085

98.977

0.407
  pilC Vibrio campbellii strain DS40M4

40.102

100

0.404
  pilC Thermus thermophilus HB27

36.275

100

0.379

Multiple sequence alignment