Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   D0B54_RS18920 Genome accession   NZ_CP031704
Coordinates   4199264..4200124 (+) Length   286 a.a.
NCBI ID   WP_117293107.1    Uniprot ID   A0A346N4Y9
Organism   Solimonas sp. K1W22B-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4194264..4205124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0B54_RS18905 (D0B54_18905) - 4195147..4196127 (+) 981 WP_162932562.1 class I SAM-dependent methyltransferase -
  D0B54_RS18910 (D0B54_18910) pilB 4196222..4197955 (+) 1734 WP_117293103.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0B54_RS18915 (D0B54_18915) pilC 4198064..4199239 (+) 1176 WP_240433655.1 type II secretion system F family protein Machinery gene
  D0B54_RS18920 (D0B54_18920) pilD 4199264..4200124 (+) 861 WP_117293107.1 A24 family peptidase Machinery gene
  D0B54_RS18925 (D0B54_18925) coaE 4200124..4200771 (+) 648 WP_117293109.1 dephospho-CoA kinase -
  D0B54_RS18930 (D0B54_18930) zapD 4200807..4201583 (+) 777 WP_117293111.1 cell division protein ZapD -
  D0B54_RS18935 (D0B54_18935) - 4201580..4201786 (+) 207 WP_162932563.1 DNA gyrase inhibitor YacG -
  D0B54_RS18940 (D0B54_18940) - 4201899..4202840 (-) 942 WP_162932564.1 Nudix family hydrolase -
  D0B54_RS18945 (D0B54_18945) argJ 4202837..4204057 (-) 1221 WP_117293115.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 30780.89 Da        Isoelectric Point: 8.1491

>NTDB_id=310639 D0B54_RS18920 WP_117293107.1 4199264..4200124(+) (pilD) [Solimonas sp. K1W22B-7]
MTLIEGLQASPGLLIFFCGLVGLVVGSFLNVVILRLPRMLEIGWKRECREMLELPPEPAEKLSLLSPPSRCPSCGTGIKP
WHNVPVVGWLILRGRCAGCSAAISPQYPLVEAATALLSGVCAWHFGWGPQLAGALVLTWALVTLTVIDLRTMLLPDIITL
PLLWLGLLLALQPVFTDLPSAVIGAAAGYLSLWSIYHLFRILTGKEGMGYGDFKLLAALGAWMGWAALPGTILLSSVVGA
VVGIGMIVLRGRDRQLPIPFGPYLAAAGWLWLIWGDTIKAAYLSTY

Nucleotide


Download         Length: 861 bp        

>NTDB_id=310639 D0B54_RS18920 WP_117293107.1 4199264..4200124(+) (pilD) [Solimonas sp. K1W22B-7]
ATGACGCTTATCGAGGGGCTGCAAGCCAGCCCCGGCTTGTTGATTTTTTTCTGCGGCCTGGTGGGCCTGGTGGTCGGCAG
CTTCCTCAACGTCGTGATCCTGCGCCTGCCGCGCATGCTCGAGATCGGCTGGAAGCGGGAGTGCCGCGAGATGCTCGAGC
TGCCGCCCGAGCCGGCCGAGAAGCTGTCGCTGCTGTCGCCGCCCTCGCGCTGCCCGTCCTGCGGCACCGGCATCAAGCCC
TGGCACAACGTCCCGGTCGTGGGCTGGCTGATCCTGCGCGGCCGCTGCGCCGGCTGCAGCGCCGCCATCTCGCCGCAGTA
CCCGCTGGTGGAGGCTGCCACCGCCCTGCTGTCCGGCGTCTGCGCCTGGCACTTCGGCTGGGGCCCGCAGCTGGCCGGCG
CCCTGGTGCTGACCTGGGCCCTGGTGACGCTGACGGTGATCGACCTGCGGACCATGCTGCTGCCGGACATCATCACCCTG
CCGCTGCTGTGGCTGGGCCTGCTGCTGGCGTTGCAGCCGGTGTTCACCGACCTGCCCAGCGCCGTCATCGGCGCCGCCGC
CGGCTATCTCAGCCTGTGGTCGATCTACCACCTGTTCCGCATCCTCACCGGCAAGGAGGGCATGGGCTACGGCGACTTCA
AGCTGCTGGCCGCGCTTGGCGCCTGGATGGGCTGGGCGGCCCTGCCCGGCACCATCCTGCTGTCCTCGGTGGTCGGCGCA
GTGGTCGGCATCGGCATGATCGTGCTGCGGGGGCGCGACCGGCAGCTGCCGATCCCCTTCGGGCCTTACCTGGCCGCCGC
CGGCTGGCTCTGGCTGATCTGGGGCGATACGATCAAGGCTGCGTACCTGAGCACCTACTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A346N4Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

51.724

100

0.524
  pilD Vibrio campbellii strain DS40M4

51.93

99.65

0.517
  pilD Acinetobacter nosocomialis M2

50.936

93.357

0.476
  pilD Acinetobacter baumannii D1279779

50.562

93.357

0.472
  pilD Neisseria gonorrhoeae MS11

48.092

91.608

0.441

Multiple sequence alignment