Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   D0B54_RS13920 Genome accession   NZ_CP031704
Coordinates   3058868..3059284 (-) Length   138 a.a.
NCBI ID   WP_117291901.1    Uniprot ID   -
Organism   Solimonas sp. K1W22B-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3059846..3071468 3058868..3059284 flank 562


Gene organization within MGE regions


Location: 3058868..3071468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0B54_RS13920 (D0B54_13920) comP 3058868..3059284 (-) 417 WP_117291901.1 pilin Machinery gene
  D0B54_RS24325 - 3059655..3059819 (-) 165 WP_162932418.1 hypothetical protein -
  D0B54_RS13925 (D0B54_13925) comP 3059846..3060259 (-) 414 WP_117291902.1 pilin Machinery gene
  D0B54_RS24330 - 3060718..3061029 (-) 312 WP_162932419.1 hypothetical protein -
  D0B54_RS13930 (D0B54_13930) - 3061625..3062332 (-) 708 WP_117291903.1 transposase -
  D0B54_RS25210 (D0B54_13935) - 3062521..3062919 (-) 399 Protein_2756 transposase -
  D0B54_RS24335 - 3063080..3063985 (-) 906 WP_162932420.1 hypothetical protein -
  D0B54_RS13940 (D0B54_13940) - 3063996..3068072 (-) 4077 WP_117291904.1 RHS repeat-associated core domain-containing protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14133.18 Da        Isoelectric Point: 6.1757

>NTDB_id=310628 D0B54_RS13920 WP_117291901.1 3058868..3059284(-) (comP) [Solimonas sp. K1W22B-7]
MKRDQMGFTLIELMIVVAIVGILAATALPIYLDYTVRSRVAELVVLAASGRDTVSENIVNDGGSIDASSCNGVSTGSLGT
SNTASLACASGVLTVTGTVKARGVVLTYTPAIGSGGVVTWACTTDSTNRRFVPADCRT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=310628 D0B54_RS13920 WP_117291901.1 3058868..3059284(-) (comP) [Solimonas sp. K1W22B-7]
ATGAAACGCGATCAGATGGGTTTTACCTTGATAGAGCTAATGATTGTCGTGGCAATCGTTGGCATTCTCGCGGCTACGGC
TTTGCCCATTTATCTCGACTACACGGTCCGTAGCCGCGTTGCGGAGCTGGTGGTTCTCGCTGCGAGCGGCCGGGACACCG
TCTCTGAAAACATCGTCAACGATGGCGGCTCCATCGATGCCTCGTCCTGCAATGGCGTGAGCACCGGGAGCCTTGGCACC
AGCAACACGGCCTCGCTGGCCTGTGCCTCGGGTGTGCTGACCGTCACCGGCACCGTCAAGGCGAGAGGGGTGGTGCTGAC
GTACACCCCGGCGATCGGGTCTGGGGGGGTCGTGACATGGGCTTGCACCACGGATTCGACGAACCGGCGATTCGTGCCGG
CGGATTGTCGCACCTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-137)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

48.966

100

0.514
  pilA Ralstonia pseudosolanacearum GMI1000

38.75

100

0.449
  pilA2 Legionella pneumophila str. Paris

45.522

97.101

0.442
  pilA2 Legionella pneumophila strain ERS1305867

44.776

97.101

0.435
  pilA/pilAII Pseudomonas stutzeri DSM 10701

35.862

100

0.377
  pilA Pseudomonas aeruginosa PAK

33.113

100

0.362
  pilA/pilA1 Eikenella corrodens VA1

32.68

100

0.362
  pilE Neisseria gonorrhoeae strain FA1090

39.062

92.754

0.362

Multiple sequence alignment