Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | D0B54_RS13925 | Genome accession | NZ_CP031704 |
| Coordinates | 3059846..3060259 (-) | Length | 137 a.a. |
| NCBI ID | WP_117291902.1 | Uniprot ID | A0A346N2C0 |
| Organism | Solimonas sp. K1W22B-7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3059846..3071468 | 3059846..3060259 | within | 0 |
Gene organization within MGE regions
Location: 3059846..3071468
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0B54_RS13925 (D0B54_13925) | comP | 3059846..3060259 (-) | 414 | WP_117291902.1 | pilin | Machinery gene |
| D0B54_RS24330 | - | 3060718..3061029 (-) | 312 | WP_162932419.1 | hypothetical protein | - |
| D0B54_RS13930 (D0B54_13930) | - | 3061625..3062332 (-) | 708 | WP_117291903.1 | transposase | - |
| D0B54_RS25210 (D0B54_13935) | - | 3062521..3062919 (-) | 399 | Protein_2756 | transposase | - |
| D0B54_RS24335 | - | 3063080..3063985 (-) | 906 | WP_162932420.1 | hypothetical protein | - |
| D0B54_RS13940 (D0B54_13940) | - | 3063996..3068072 (-) | 4077 | WP_117291904.1 | RHS repeat-associated core domain-containing protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 14213.43 Da Isoelectric Point: 8.1161
>NTDB_id=310629 D0B54_RS13925 WP_117291902.1 3059846..3060259(-) (comP) [Solimonas sp. K1W22B-7]
MKHAQRAFTLIELMIVVAIIGILAIIALPIYQEYTVRSRVAELVVLASGGRATVTENIANRGNAIDAASCDGVTTAITAT
NSTASLTCTAGVLVITGTDKAKSVALTYTPSIGSGGVVAWKCTADPSNQRYVPAECR
MKHAQRAFTLIELMIVVAIIGILAIIALPIYQEYTVRSRVAELVVLASGGRATVTENIANRGNAIDAASCDGVTTAITAT
NSTASLTCTAGVLVITGTDKAKSVALTYTPSIGSGGVVAWKCTADPSNQRYVPAECR
Nucleotide
Download Length: 414 bp
>NTDB_id=310629 D0B54_RS13925 WP_117291902.1 3059846..3060259(-) (comP) [Solimonas sp. K1W22B-7]
ATGAAACACGCACAACGGGCTTTTACCTTGATCGAGTTGATGATCGTGGTGGCCATCATCGGCATCCTGGCGATCATTGC
ACTGCCGATCTACCAGGAATACACGGTGCGCAGCCGCGTCGCGGAGCTGGTGGTCCTGGCAAGCGGGGGCAGGGCAACGG
TCACCGAGAACATCGCCAACCGGGGCAATGCCATCGATGCCGCTTCCTGCGACGGGGTGACCACGGCGATCACTGCCACC
AACAGCACTGCCTCGCTCACCTGTACCGCAGGCGTGCTGGTGATCACCGGCACCGACAAGGCCAAGAGCGTGGCGCTGAC
GTATACCCCGTCCATCGGGTCCGGCGGCGTCGTGGCCTGGAAGTGCACTGCCGATCCTTCGAATCAGCGCTACGTTCCGG
CCGAGTGTCGCTAG
ATGAAACACGCACAACGGGCTTTTACCTTGATCGAGTTGATGATCGTGGTGGCCATCATCGGCATCCTGGCGATCATTGC
ACTGCCGATCTACCAGGAATACACGGTGCGCAGCCGCGTCGCGGAGCTGGTGGTCCTGGCAAGCGGGGGCAGGGCAACGG
TCACCGAGAACATCGCCAACCGGGGCAATGCCATCGATGCCGCTTCCTGCGACGGGGTGACCACGGCGATCACTGCCACC
AACAGCACTGCCTCGCTCACCTGTACCGCAGGCGTGCTGGTGATCACCGGCACCGACAAGGCCAAGAGCGTGGCGCTGAC
GTATACCCCGTCCATCGGGTCCGGCGGCGTCGTGGCCTGGAAGTGCACTGCCGATCCTTCGAATCAGCGCTACGTTCCGG
CCGAGTGTCGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
48.98 |
100 |
0.526 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
36.842 |
100 |
0.46 |
| pilA2 | Legionella pneumophila str. Paris |
44.776 |
97.81 |
0.438 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
44.03 |
97.81 |
0.431 |
| pilA | Acinetobacter baumannii strain A118 |
38.298 |
100 |
0.394 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
37.324 |
100 |
0.387 |
| pilA | Pseudomonas aeruginosa PAK |
33.987 |
100 |
0.38 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
35.417 |
100 |
0.372 |