Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DXY21_RS04785 Genome accession   NZ_CP031694
Coordinates   935712..936824 (-) Length   370 a.a.
NCBI ID   WP_024084783.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM101368     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 930712..941824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY21_RS04770 (DXY21_00947) gyrA 930798..933257 (-) 2460 WP_004392898.1 DNA gyrase subunit A -
  DXY21_RS04775 (DXY21_00948) gyrB 933473..935389 (-) 1917 WP_004392900.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  DXY21_RS04780 (DXY21_00949) remB 935449..935694 (-) 246 WP_004392908.1 extracellular matrix regulator RemB -
  DXY21_RS04785 (DXY21_00950) recF 935712..936824 (-) 1113 WP_024084783.1 DNA replication/repair protein RecF Machinery gene
  DXY21_RS04790 (DXY21_00951) rlbA 936840..937055 (-) 216 WP_004392910.1 ribosome maturation protein RlbA -
  DXY21_RS04795 (DXY21_00952) dnaN 937190..938326 (-) 1137 WP_004392911.1 DNA polymerase III subunit beta -
  DXY21_RS04800 (DXY21_00953) dnaA 938511..939851 (-) 1341 WP_004392913.1 chromosomal replication initiator protein DnaA -
  DXY21_RS04805 rpmH 940473..940607 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  DXY21_RS04810 (DXY21_00954) rnpA 940762..941112 (+) 351 WP_004392944.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42428.35 Da        Isoelectric Point: 7.0882

>NTDB_id=310379 DXY21_RS04785 WP_024084783.1 935712..936824(-) (recF) [Bacillus velezensis strain SRCM101368]
MYIQNLELTSYRNYERAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVMKRNGD
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSAVYLYDLSLYQKILSQR
NHFLKQLQSRKQTDRTMLDVLTDQLIEAAAKVVARRLQFTAQLEKWAQPIHSGISRGLEELTLKYHTALDVSDPKDLSKI
GNSYQESFSKLKEKEIERGVTLFGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHDTLHQAGMFRVENGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=310379 DXY21_RS04785 WP_024084783.1 935712..936824(-) (recF) [Bacillus velezensis strain SRCM101368]
TTGTATATCCAAAATTTAGAATTAACATCCTACCGTAATTATGAGCGCGCTGAGCTTCAATTCGAAAACAAGGTGAATGT
GATCATCGGGGAAAATGCCCAGGGCAAAACCAATCTGATGGAAGCCATCTATGTCCTTTCGATGGCAAAATCACACCGCA
CCTCAAATGACAAAGAACTTATACGGTGGGACGAAGACTATGCTAAAATAGAAGGAAGAGTGATGAAGCGCAACGGGGAC
ATCCCGATGCAGCTTGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATAGAGCAGCAAAAACTCAGTCAGTA
TGTCGGAGCGCTGAACACCATTATGTTTGCCCCTGAGGATTTAAATCTCGTCAAAGGAAGCCCTCAGGTGAGGAGAAGAT
TTCTCGATATGGAGATCGGTCAGGTTTCTGCCGTTTATCTGTATGATTTATCTCTTTATCAAAAAATCCTTTCACAGCGG
AATCATTTTCTGAAACAGCTGCAAAGCCGGAAACAGACTGACCGGACCATGCTTGACGTTCTCACTGATCAGCTGATCGA
GGCAGCCGCAAAAGTTGTCGCCAGACGTCTGCAGTTTACGGCGCAGCTTGAAAAATGGGCACAGCCGATCCATTCCGGCA
TTTCCCGGGGACTTGAAGAACTGACGCTTAAGTATCACACGGCGCTTGATGTATCAGATCCCAAAGATTTGTCGAAAATA
GGTAACAGCTACCAGGAGTCTTTTTCGAAATTAAAAGAAAAAGAAATAGAACGAGGCGTCACATTATTCGGACCGCATCG
GGATGATGTCCTTTTTTATGTGAACGGACGCGATGTGCAGACTTACGGTTCGCAGGGACAGCAGCGTACGACGGCTTTGT
CTCTGAAGCTGGCTGAAATAGATTTGATTCATGAAGAAATCGGAGAATACCCCATTTTACTTTTGGATGATGTACTAAGC
GAGCTGGATGATTACCGACAGTCCCATTTGCTTCATACGATCCAAGGCCGTGTGCAGACATTTGTCACCACGACGAGCGT
GGATGGCATTGACCACGATACCTTACATCAAGCAGGAATGTTCCGTGTGGAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

94.324

100

0.943

Multiple sequence alignment