Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CH576_RS03630 | Genome accession | NZ_CP031691 |
| Coordinates | 718715..719164 (+) | Length | 149 a.a. |
| NCBI ID | WP_105894634.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P615-8618 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 713715..724164
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH576_RS03610 (CH576_03610) | rsmE | 714179..714916 (-) | 738 | WP_005686736.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| CH576_RS03615 (CH576_03615) | lnt | 714966..716495 (-) | 1530 | WP_116941799.1 | apolipoprotein N-acyltransferase | - |
| CH576_RS03620 (CH576_03620) | corC | 716518..717417 (-) | 900 | WP_116941683.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| CH576_RS03625 (CH576_03625) | ampD | 718040..718600 (-) | 561 | WP_042599472.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| CH576_RS03630 (CH576_03630) | pilA | 718715..719164 (+) | 450 | WP_105894634.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CH576_RS03635 (CH576_03635) | pilB | 719161..720555 (+) | 1395 | WP_105894635.1 | GspE/PulE family protein | Machinery gene |
| CH576_RS03640 (CH576_03640) | pilC | 720552..721769 (+) | 1218 | WP_105894636.1 | type II secretion system F family protein | Machinery gene |
| CH576_RS03645 (CH576_03645) | pilD | 721766..722458 (+) | 693 | WP_105894637.1 | A24 family peptidase | Machinery gene |
| CH576_RS03650 (CH576_03650) | rho | 722512..723774 (-) | 1263 | WP_005648966.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15398.73 Da Isoelectric Point: 8.4623
>NTDB_id=310238 CH576_RS03630 WP_105894634.1 718715..719164(+) (pilA) [Haemophilus influenzae strain P615-8618]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTGKPSTCSGGSNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAAAGVTWTTTCKGTDASLFPANFCGSVTQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTGKPSTCSGGSNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAAAGVTWTTTCKGTDASLFPANFCGSVTQ
Nucleotide
Download Length: 450 bp
>NTDB_id=310238 CH576_RS03630 WP_105894634.1 718715..719164(+) (pilA) [Haemophilus influenzae strain P615-8618]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCTTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCAC
CTTATAAGGCTGATGTGGAATTATGCGTTTATAGCACAGGTAAACCTTCTACTTGCTCGGGAGGAAGCAATGGAATTGCA
GCAGATATAACGACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAGCAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCTTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCAC
CTTATAAGGCTGATGTGGAATTATGCGTTTATAGCACAGGTAAACCTTCTACTTGCTCGGGAGGAAGCAATGGAATTGCA
GCAGATATAACGACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAGCAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
94.631 |
100 |
0.946 |
| pilA | Haemophilus influenzae Rd KW20 |
88.591 |
100 |
0.886 |
| pilA | Glaesserella parasuis strain SC1401 |
56.376 |
100 |
0.564 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.865 |
99.329 |
0.396 |
| pilA2 | Legionella pneumophila str. Paris |
39.865 |
99.329 |
0.396 |
| pilA | Vibrio campbellii strain DS40M4 |
39.007 |
94.631 |
0.369 |
| comP | Acinetobacter baylyi ADP1 |
42.52 |
85.235 |
0.362 |