Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DRC71_RS12685 Genome accession   NZ_CP031605
Coordinates   2635845..2636258 (-) Length   137 a.a.
NCBI ID   WP_189695506.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain VB16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2600410..2643051 2635845..2636258 within 0


Gene organization within MGE regions


Location: 2600410..2643051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRC71_RS12435 (DRC71_12550) - 2600410..2601798 (-) 1389 WP_189695472.1 N-acetylmuramoyl-L-alanine amidase -
  DRC71_RS12440 (DRC71_12555) - 2601811..2602116 (-) 306 WP_189695473.1 phage holin -
  DRC71_RS12445 (DRC71_12560) - 2602164..2603624 (-) 1461 WP_189695474.1 BppU family phage baseplate upper protein -
  DRC71_RS12450 (DRC71_12565) - 2603633..2605519 (-) 1887 WP_189695600.1 glucosaminidase domain-containing protein -
  DRC71_RS12455 (DRC71_12570) - 2605647..2605946 (-) 300 WP_265477336.1 DUF2951 family protein -
  DRC71_RS12460 (DRC71_12575) - 2605984..2606133 (-) 150 WP_189695476.1 XkdX family protein -
  DRC71_RS12465 (DRC71_12580) - 2606135..2606545 (-) 411 WP_189695477.1 hypothetical protein -
  DRC71_RS12470 (DRC71_12585) - 2606558..2608048 (-) 1491 WP_189695478.1 BppU family phage baseplate upper protein -
  DRC71_RS12475 (DRC71_12590) - 2608048..2610705 (-) 2658 WP_189695479.1 peptidase G2 autoproteolytic cleavage domain-containing protein -
  DRC71_RS12480 (DRC71_12595) - 2610708..2612210 (-) 1503 WP_189695480.1 phage tail protein -
  DRC71_RS12485 (DRC71_12600) - 2612219..2613133 (-) 915 WP_189695481.1 phage tail domain-containing protein -
  DRC71_RS12490 (DRC71_12605) - 2613151..2616144 (-) 2994 WP_189695482.1 terminase -
  DRC71_RS12495 (DRC71_12610) - 2616147..2616428 (-) 282 WP_189695483.1 hypothetical protein -
  DRC71_RS12500 (DRC71_12615) - 2616497..2616994 (-) 498 WP_189695484.1 tail assembly chaperone -
  DRC71_RS12505 (DRC71_12620) - 2617055..2617630 (-) 576 WP_189695485.1 phage tail protein -
  DRC71_RS12510 (DRC71_12625) - 2617635..2618057 (-) 423 WP_189695486.1 DUF3168 domain-containing protein -
  DRC71_RS12515 (DRC71_12630) - 2618068..2618481 (-) 414 WP_189695487.1 HK97-gp10 family putative phage morphogenesis protein -
  DRC71_RS12520 (DRC71_12635) - 2618468..2618803 (-) 336 WP_189695488.1 phage head closure protein -
  DRC71_RS12525 (DRC71_12640) - 2618805..2619101 (-) 297 WP_019167201.1 phage head-tail connector protein -
  DRC71_RS12530 (DRC71_12645) - 2619101..2619385 (-) 285 WP_189695489.1 Rho termination factor N-terminal domain-containing protein -
  DRC71_RS12535 (DRC71_12650) - 2619402..2620238 (-) 837 WP_189695490.1 N4-gp56 family major capsid protein -
  DRC71_RS12540 (DRC71_12655) - 2620259..2620852 (-) 594 WP_189695491.1 phage scaffolding protein -
  DRC71_RS12545 (DRC71_12665) - 2621145..2622098 (-) 954 WP_189695492.1 phage minor head protein -
  DRC71_RS12550 (DRC71_12670) - 2622067..2623485 (-) 1419 WP_189695493.1 phage portal protein -
  DRC71_RS12555 (DRC71_12675) - 2623486..2624751 (-) 1266 WP_189695494.1 PBSX family phage terminase large subunit -
  DRC71_RS12560 (DRC71_12680) - 2624735..2625223 (-) 489 WP_065354587.1 terminase small subunit -
  DRC71_RS12565 (DRC71_12685) - 2625521..2625940 (-) 420 WP_065354588.1 transcriptional regulator -
  DRC71_RS12570 - 2625943..2626095 (-) 153 WP_179292371.1 hypothetical protein -
  DRC71_RS12575 (DRC71_12690) rinB 2626095..2626265 (-) 171 WP_096533881.1 transcriptional activator RinB -
  DRC71_RS12580 (DRC71_12695) - 2626280..2626468 (-) 189 WP_189695495.1 DUF1381 domain-containing protein -
  DRC71_RS12585 (DRC71_12700) - 2626639..2627169 (-) 531 WP_189695496.1 dUTPase -
  DRC71_RS12590 - 2627162..2627317 (-) 156 WP_189695497.1 hypothetical protein -
  DRC71_RS12595 (DRC71_12705) - 2627318..2627584 (-) 267 WP_189695498.1 hypothetical protein -
  DRC71_RS12600 - 2627608..2627769 (-) 162 WP_015728819.1 hypothetical protein -
  DRC71_RS12605 - 2627770..2627925 (-) 156 WP_179292373.1 hypothetical protein -
  DRC71_RS12610 (DRC71_12710) - 2627926..2628105 (-) 180 WP_096533886.1 hypothetical protein -
  DRC71_RS14045 (DRC71_12715) - 2628106..2628486 (-) 381 WP_242442481.1 hypothetical protein -
  DRC71_RS12620 (DRC71_12720) - 2628486..2628737 (-) 252 WP_189695499.1 hypothetical protein -
  DRC71_RS12625 (DRC71_12725) - 2628734..2629657 (-) 924 WP_409327408.1 DNA cytosine methyltransferase -
  DRC71_RS12630 (DRC71_12730) - 2629676..2630200 (-) 525 WP_110149719.1 HNH endonuclease -
  DRC71_RS12635 (DRC71_12735) - 2630207..2630458 (-) 252 WP_189695500.1 SAV1978 family virulence-associated passenger protein -
  DRC71_RS12640 (DRC71_12740) - 2630459..2630911 (-) 453 WP_189695501.1 DUF3310 domain-containing protein -
  DRC71_RS12645 (DRC71_12745) - 2631072..2631392 (-) 321 WP_189695502.1 hypothetical protein -
  DRC71_RS12650 (DRC71_12750) - 2631405..2631623 (-) 219 WP_096533165.1 hypothetical protein -
  DRC71_RS12655 (DRC71_12755) - 2631607..2632047 (-) 441 WP_189695503.1 RusA family crossover junction endodeoxyribonuclease -
  DRC71_RS12660 (DRC71_12765) - 2632249..2633496 (-) 1248 WP_375794029.1 DnaB helicase C-terminal domain-containing protein -
  DRC71_RS12665 (DRC71_12770) - 2633486..2633827 (-) 342 WP_037543633.1 hypothetical protein -
  DRC71_RS12670 (DRC71_12775) - 2633824..2634609 (-) 786 WP_189695504.1 phage replisome organizer N-terminal domain-containing protein -
  DRC71_RS12675 (DRC71_12780) - 2634609..2635280 (-) 672 WP_189695505.1 putative HNHc nuclease -
  DRC71_RS12680 (DRC71_12785) - 2635281..2635832 (-) 552 WP_099989996.1 NUMOD4 motif-containing HNH endonuclease -
  DRC71_RS12685 (DRC71_12790) ssbA 2635845..2636258 (-) 414 WP_189695506.1 single-stranded DNA-binding protein Machinery gene
  DRC71_RS12690 (DRC71_12795) - 2636258..2636881 (-) 624 WP_189695507.1 ERF family protein -
  DRC71_RS12695 (DRC71_12800) - 2636885..2637433 (-) 549 WP_189695508.1 host-nuclease inhibitor Gam family protein -
  DRC71_RS12700 (DRC71_12805) - 2637450..2637632 (-) 183 WP_189695509.1 hypothetical protein -
  DRC71_RS12705 (DRC71_12810) - 2637644..2637904 (-) 261 WP_189695510.1 DUF1108 family protein -
  DRC71_RS12710 (DRC71_12815) - 2637993..2638172 (-) 180 WP_189695602.1 hypothetical protein -
  DRC71_RS14300 (DRC71_12820) - 2638183..2638230 (-) 48 Protein_2510 hypothetical protein -
  DRC71_RS12720 (DRC71_12825) - 2638279..2638992 (-) 714 WP_265477337.1 BRO family protein -
  DRC71_RS12725 (DRC71_12830) - 2639023..2639466 (-) 444 WP_065354605.1 hypothetical protein -
  DRC71_RS12730 (DRC71_12835) - 2639479..2639718 (-) 240 WP_019165844.1 helix-turn-helix transcriptional regulator -
  DRC71_RS12735 (DRC71_12840) - 2639889..2640587 (+) 699 WP_096536624.1 S24 family peptidase -
  DRC71_RS12740 - 2640599..2640766 (+) 168 WP_019165842.1 hypothetical protein -
  DRC71_RS12745 (DRC71_12845) - 2640779..2641609 (+) 831 WP_189695511.1 DUF5067 domain-containing protein -
  DRC71_RS12750 (DRC71_12850) - 2641666..2643051 (+) 1386 WP_189695512.1 recombinase family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15602.20 Da        Isoelectric Point: 6.3425

>NTDB_id=307877 DRC71_RS12685 WP_189695506.1 2635845..2636258(-) (ssbA) [Staphylococcus pseudintermedius strain VB16]
MLNRVVLIGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQQADFINCIVFRKQAENVNNYLNKGNLAGVDGRLQSR
SYENQEGRRIFVTEVICDSVQFLESKSNGQSNSQAKQQQRQDNPFDNSDFDDSSLPF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=307877 DRC71_RS12685 WP_189695506.1 2635845..2636258(-) (ssbA) [Staphylococcus pseudintermedius strain VB16]
ATGCTTAACAGAGTCGTATTAATAGGTCGATTAACAAAAGACCCTGAATTCAGAACAACGCAATCAGGCGTTGAGGTAGC
AACATTTACATTGGCAGTTAACCGCAATTACAAAAATAAAAACGGAGAACAACAAGCAGACTTTATCAACTGTATTGTTT
TTCGTAAGCAAGCAGAAAATGTGAACAACTATCTAAATAAAGGAAATCTAGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGACGACGTATATTCGTTACAGAAGTGATTTGTGATAGCGTGCAATTTTTAGAGTCTAAATC
TAATGGTCAATCGAACAGTCAAGCTAAACAACAACAAAGGCAGGACAATCCGTTTGATAACAGTGACTTTGATGACTCGT
CACTCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.093

78.102

0.547
  ssb Latilactobacillus sakei subsp. sakei 23K

57.944

78.102

0.453
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

77.372

0.431
  ssbB/cilA Streptococcus mitis NCTC 12261

40.714

100

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.714

100

0.416
  ssbB/cilA Streptococcus mitis SK321

40

100

0.409
  ssbB/cilA Streptococcus pneumoniae Rx1

40

100

0.409
  ssbB/cilA Streptococcus pneumoniae D39

40

100

0.409
  ssbB/cilA Streptococcus pneumoniae R6

40

100

0.409
  ssbA Streptococcus mutans UA159

39.416

100

0.394
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.909

96.35

0.394

Multiple sequence alignment