Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | DMO12_RS17210 | Genome accession | NZ_CP031380 |
| Coordinates | 3608942..3609379 (-) | Length | 145 a.a. |
| NCBI ID | WP_000993715.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii ACICU | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3603942..3614379
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DMO12_RS17185 (DMO12_10239) | - | 3604302..3604685 (+) | 384 | WP_000090000.1 | RidA family protein | - |
| DMO12_RS17190 (DMO12_10242) | - | 3604895..3605089 (+) | 195 | WP_000289091.1 | bacterioferritin-associated ferredoxin | - |
| DMO12_RS17195 (DMO12_10245) | bfr | 3605334..3605798 (+) | 465 | WP_000678123.1 | bacterioferritin | - |
| DMO12_RS17200 (DMO12_10248) | - | 3605839..3607467 (-) | 1629 | WP_001195765.1 | PglL family O-oligosaccharyltransferase | - |
| DMO12_RS17205 (DMO12_10251) | - | 3607574..3608884 (-) | 1311 | WP_000914627.1 | O-antigen ligase | - |
| DMO12_RS17210 (DMO12_10254) | pilA | 3608942..3609379 (-) | 438 | WP_000993715.1 | pilin | Machinery gene |
| DMO12_RS17215 (DMO12_10257) | - | 3609722..3610282 (-) | 561 | WP_000258955.1 | TPM domain-containing protein | - |
| DMO12_RS17220 (DMO12_10260) | - | 3610276..3611358 (-) | 1083 | WP_001246375.1 | YgcG family protein | - |
| DMO12_RS17225 (DMO12_10263) | - | 3611380..3611970 (-) | 591 | WP_000846931.1 | LemA family protein | - |
| DMO12_RS17230 (DMO12_10266) | - | 3612101..3612988 (-) | 888 | WP_001017314.1 | metal-dependent hydrolase | - |
Sequence
Protein
Download Length: 145 a.a. Molecular weight: 15022.14 Da Isoelectric Point: 8.1097
>NTDB_id=306462 DMO12_RS17210 WP_000993715.1 3608942..3609379(-) (pilA) [Acinetobacter baumannii ACICU]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTAALTDVEALGLQKSTNAC
STITTSIGTNGASNITCTLKGTSQINSKKIEWIRDADNATNGTTGAWRCKTDVAENLRPKSCGAS
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTAALTDVEALGLQKSTNAC
STITTSIGTNGASNITCTLKGTSQINSKKIEWIRDADNATNGTTGAWRCKTDVAENLRPKSCGAS
Nucleotide
Download Length: 438 bp
>NTDB_id=306462 DMO12_RS17210 WP_000993715.1 3608942..3609379(-) (pilA) [Acinetobacter baumannii ACICU]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAAAACTACATTGCTAAGTCACAAGTAAGTACTGGTTTAGCTGATATTACTGCTGGTAAGACAAACGCAG
AAACTAAATTAGCAGAAGGTTTAACTGCGGCATTAACTGATGTAGAAGCTTTAGGCTTACAAAAATCTACGAATGCTTGT
AGTACTATTACAACCAGTATCGGAACTAATGGTGCAAGTAATATTACTTGTACATTGAAAGGTACATCACAAATTAATAG
TAAAAAAATTGAATGGATCCGTGATGCAGATAATGCTACAAATGGTACGACAGGTGCTTGGCGCTGTAAAACTGATGTAG
CTGAAAACTTACGTCCTAAATCATGTGGTGCTTCTTAA
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCGATTGCGAT
TCCTGCTTATCAAAACTACATTGCTAAGTCACAAGTAAGTACTGGTTTAGCTGATATTACTGCTGGTAAGACAAACGCAG
AAACTAAATTAGCAGAAGGTTTAACTGCGGCATTAACTGATGTAGAAGCTTTAGGCTTACAAAAATCTACGAATGCTTGT
AGTACTATTACAACCAGTATCGGAACTAATGGTGCAAGTAATATTACTTGTACATTGAAAGGTACATCACAAATTAATAG
TAAAAAAATTGAATGGATCCGTGATGCAGATAATGCTACAAATGGTACGACAGGTGCTTGGCGCTGTAAAACTGATGTAG
CTGAAAACTTACGTCCTAAATCATGTGGTGCTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
52.414 |
100 |
0.524 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
44.218 |
100 |
0.448 |
| pilA | Vibrio cholerae strain A1552 |
44.218 |
100 |
0.448 |
| pilA | Vibrio cholerae C6706 |
44.218 |
100 |
0.448 |
| pilA | Pseudomonas aeruginosa PAK |
41.558 |
100 |
0.441 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
43.357 |
98.621 |
0.428 |
| comP | Acinetobacter baylyi ADP1 |
40 |
100 |
0.414 |
| pilA | Haemophilus influenzae 86-028NP |
38.816 |
100 |
0.407 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.845 |
97.931 |
0.4 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
43.651 |
86.897 |
0.379 |