Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   DV130_RS10050 Genome accession   NZ_CP031248
Coordinates   1857515..1857910 (+) Length   131 a.a.
NCBI ID   WP_000282467.1    Uniprot ID   A0A098Z0L0
Organism   Streptococcus pneumoniae strain M26365     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1852515..1862910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV130_RS10005 - 1852597..1852959 (+) 363 WP_000078805.1 DUF2200 domain-containing protein -
  DV130_RS10010 - 1852956..1853459 (+) 504 WP_000800942.1 phosphatase PAP2 family protein -
  DV130_RS10015 - 1853573..1854019 (+) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  DV130_RS10020 - 1854025..1854699 (+) 675 WP_000725750.1 membrane protein -
  DV130_RS10025 - 1854941..1855138 (+) 198 Protein_1888 N-acetylmuramoyl-L-alanine amidase family protein -
  DV130_RS12800 - 1855163..1855294 (-) 132 WP_001811306.1 hypothetical protein -
  DV130_RS10030 - 1855388..1855687 (+) 300 WP_001818001.1 DUF4651 domain-containing protein -
  DV130_RS10035 - 1855684..1856001 (+) 318 WP_000615776.1 thioredoxin family protein -
  DV130_RS10040 ytpR 1856017..1856643 (+) 627 WP_000578285.1 YtpR family tRNA-binding protein -
  DV130_RS10045 - 1856676..1857437 (+) 762 WP_001107757.1 SDR family oxidoreductase -
  DV130_RS10050 ssbB/cilA 1857515..1857910 (+) 396 WP_000282467.1 single-stranded DNA-binding protein Machinery gene
  DV130_RS10055 groES 1858180..1858464 (+) 285 WP_000917339.1 co-chaperone GroES -
  DV130_RS10060 groL 1858480..1860102 (+) 1623 WP_000031573.1 chaperonin GroEL -
  DV130_RS12265 - 1860240..1860995 (+) 756 Protein_1897 epoxyqueuosine reductase QueH -
  DV130_RS10075 - 1861441..1862214 (+) 774 WP_044792121.1 class I SAM-dependent methyltransferase -
  DV130_RS10080 - 1862227..1862565 (+) 339 WP_001809290.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14925.89 Da        Isoelectric Point: 5.9409

>NTDB_id=304883 DV130_RS10050 WP_000282467.1 1857515..1857910(+) (ssbB/cilA) [Streptococcus pneumoniae strain M26365]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=304883 DV130_RS10050 WP_000282467.1 1857515..1857910(+) (ssbB/cilA) [Streptococcus pneumoniae strain M26365]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTAACAGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTAGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098Z0L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae D39

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

100

100

1
  ssbB/cilA Streptococcus pneumoniae R6

100

100

1
  ssbB/cilA Streptococcus pneumoniae TIGR4

99.237

100

0.992
  ssbB/cilA Streptococcus mitis SK321

98.473

100

0.985
  ssbB/cilA Streptococcus mitis NCTC 12261

98.473

100

0.985
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405

Multiple sequence alignment