Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   DV119_RS01860 Genome accession   NZ_CP031245
Coordinates   309303..309707 (-) Length   134 a.a.
NCBI ID   WP_000588020.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M16808     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304303..314707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV119_RS01825 rnpA 304717..305088 (-) 372 WP_000739246.1 ribonuclease P protein component -
  DV119_RS11985 - 305105..305236 (-) 132 WP_000768904.1 hypothetical protein -
  DV119_RS01830 - 305237..306427 (-) 1191 WP_000167766.1 acetate kinase -
  DV119_RS01835 comYH 306478..307431 (-) 954 WP_050308921.1 class I SAM-dependent methyltransferase Machinery gene
  DV119_RS01840 - 307492..308086 (-) 595 Protein_314 class I SAM-dependent methyltransferase -
  DV119_RS01845 comGG/cglG 308223..308636 (-) 414 WP_050102600.1 competence type IV pilus minor pilin ComGG Machinery gene
  DV119_RS01850 comGF/cglF 308614..309075 (-) 462 WP_000250544.1 competence type IV pilus minor pilin ComGF Machinery gene
  DV119_RS01855 comGE/cglE 309038..309340 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  DV119_RS01860 comGD/cglD 309303..309707 (-) 405 WP_000588020.1 competence type IV pilus minor pilin ComGD Machinery gene
  DV119_RS01865 comGC/cglC 309700..310026 (-) 327 WP_000738632.1 comG operon protein ComGC Machinery gene
  DV119_RS01870 comGB/cglB 310028..311044 (-) 1017 WP_114880773.1 competence type IV pilus assembly protein ComGB Machinery gene
  DV119_RS01875 comGA/cglA/cilD 310992..311933 (-) 942 WP_000249549.1 competence type IV pilus ATPase ComGA Machinery gene
  DV119_RS01880 - 312009..312374 (-) 366 WP_000286415.1 DUF1033 family protein -
  DV119_RS01885 - 312525..313583 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14662.89 Da        Isoelectric Point: 10.2164

>NTDB_id=304611 DV119_RS01860 WP_000588020.1 309303..309707(-) (comGD/cglD) [Streptococcus pneumoniae strain M16808]
MIKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTISNGSQKLPV
PKGIQVPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide


Download         Length: 405 bp        

>NTDB_id=304611 DV119_RS01860 WP_000588020.1 309303..309707(-) (comGD/cglD) [Streptococcus pneumoniae strain M16808]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGTCTTGTGAGTATCCTTGCCTTGGGCTTGTCCGGCTC
TGTTCAGTCCACTTTTGCGGCAGTAGAGGAACAGATTTTCTTTATGGAATTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTGAACTTAGATGGGCAGACGATTAGCAATGGCAGTCAAAAGTTGCCAGTC
CCTAAAGGAATTCAGGTCCCATCAGGCCAAAGTATTACATTTGACCGTGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae TIGR4

97.761

100

0.978
  comGD/cglD Streptococcus pneumoniae Rx1

97.015

100

0.97
  comGD/cglD Streptococcus pneumoniae D39

97.015

100

0.97
  comGD/cglD Streptococcus pneumoniae R6

97.015

100

0.97
  comGD/cglD Streptococcus mitis SK321

96.269

100

0.963
  comGD/cglD Streptococcus mitis NCTC 12261

96.992

99.254

0.963
  comYD Streptococcus gordonii str. Challis substr. CH1

59.055

94.776

0.56
  comYD Streptococcus mutans UA140

50

95.522

0.478
  comYD Streptococcus mutans UA159

50

95.522

0.478

Multiple sequence alignment