Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECE110019_RS07290 Genome accession   NZ_CP035751
Coordinates   1505399..1505875 (+) Length   158 a.a.
NCBI ID   WP_001299629.1    Uniprot ID   -
Organism   Escherichia coli E110019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1500399..1510875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE110019_RS07270 - 1501677..1502582 (+) 906 WP_000203541.1 diguanylate cyclase regulator RdcB family protein -
  ECE110019_RS07275 - 1502579..1503649 (+) 1071 WP_000102669.1 patatin-like phospholipase family protein -
  ECE110019_RS07280 - 1503989..1504807 (+) 819 WP_001234682.1 DUF932 domain-containing protein -
  ECE110019_RS07285 - 1504898..1505383 (+) 486 WP_000214398.1 antirestriction protein -
  ECE110019_RS07290 radC 1505399..1505875 (+) 477 WP_001299629.1 RadC family protein Machinery gene
  ECE110019_RS07295 - 1505938..1506159 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  ECE110019_RS07300 - 1506322..1506696 (+) 375 WP_001280953.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECE110019_RS07305 - 1506743..1507117 (+) 375 WP_000854914.1 TA system toxin CbtA family protein -
  ECE110019_RS07310 - 1507114..1507605 (+) 492 WP_000976857.1 DUF5983 family protein -
  ECE110019_RS07315 - 1507617..1507814 (+) 198 WP_000839282.1 DUF957 domain-containing protein -
  ECE110019_RS07320 - 1507899..1508741 (+) 843 WP_001280481.1 DUF4942 domain-containing protein -
  ECE110019_RS07330 ghrA 1509212..1510150 (+) 939 WP_000351308.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17689.28 Da        Isoelectric Point: 6.9242

>NTDB_id=304570 ECE110019_RS07290 WP_001299629.1 1505399..1505875(+) (radC) [Escherichia coli E110019]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNASAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=304570 ECE110019_RS07290 WP_001299629.1 1505399..1505875(+) (radC) [Escherichia coli E110019]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCTCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386

Multiple sequence alignment