Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ECE110019_RS06150 Genome accession   NZ_CP035751
Coordinates   1294856..1295485 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli E110019     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1289856..1300485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECE110019_RS06130 ycbZ 1290257..1292017 (-) 1761 WP_000156526.1 Lon protease family protein -
  ECE110019_RS06135 matP 1292203..1292655 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ECE110019_RS06140 ompA 1292731..1293771 (-) 1041 WP_000750416.1 porin OmpA -
  ECE110019_RS06145 sulA 1294128..1294637 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ECE110019_RS06150 sxy/tfoX 1294856..1295485 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ECE110019_RS06155 yccS 1295448..1297610 (-) 2163 WP_000875015.1 YccS family putative transporter -
  ECE110019_RS06160 yccF 1297620..1298066 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ECE110019_RS06165 helD 1298189..1300243 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=304569 ECE110019_RS06150 WP_000839153.1 1294856..1295485(+) (sxy/tfoX) [Escherichia coli E110019]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=304569 ECE110019_RS06150 WP_000839153.1 1294856..1295485(+) (sxy/tfoX) [Escherichia coli E110019]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment