Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   UCCLBBS124_RS04355 Genome accession   NZ_CP031169
Coordinates   942771..944021 (+) Length   416 a.a.
NCBI ID   WP_039105136.1    Uniprot ID   A0A0C1PXC1
Organism   Levilactobacillus brevis strain UCCLBBS124     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 937771..949021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UCCLBBS124_RS04335 (UCCLBBS124_0858) yfmF 938485..939780 (+) 1296 WP_039105134.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  UCCLBBS124_RS04340 (UCCLBBS124_0859) yfmH 939758..941047 (+) 1290 WP_021742877.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  UCCLBBS124_RS04345 (UCCLBBS124_0860) - 941161..942066 (+) 906 WP_011668110.1 helix-turn-helix domain-containing protein -
  UCCLBBS124_RS04350 (UCCLBBS124_0861) pgsA 942128..942715 (+) 588 WP_011668109.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  UCCLBBS124_RS04355 (UCCLBBS124_0862) cinA 942771..944021 (+) 1251 WP_039105136.1 competence/damage-inducible protein A Machinery gene
  UCCLBBS124_RS04360 (UCCLBBS124_0863) recA 944115..945248 (+) 1134 WP_039105138.1 recombinase RecA Machinery gene
  UCCLBBS124_RS13570 (UCCLBBS124_0864) - 945331..945483 (-) 153 WP_164475119.1 hypothetical protein -
  UCCLBBS124_RS04365 (UCCLBBS124_0865) rny 945811..947370 (+) 1560 WP_011667971.1 ribonuclease Y -
  UCCLBBS124_RS04370 (UCCLBBS124_0866) - 947502..948296 (+) 795 WP_024525499.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44787.89 Da        Isoelectric Point: 5.4819

>NTDB_id=303890 UCCLBBS124_RS04355 WP_039105136.1 942771..944021(+) (cinA) [Levilactobacillus brevis strain UCCLBBS124]
MQAEIIAVGTEILLGQIVDTNSAFIARELAEAGIEVYYHSLVGDNATRLTAVVEQARSRSDLVIISGGLGPTKDDLTKQT
VAHLLGVKLVEDALAMAKIRRRFAINGREMTPNNRLQALYPAGSQPLANRTGLAVGAFYQDPDGADIMLLPGPPSETEPM
FREQALPLLKQTYPRSEYLSSRVLRFFGIGESQLVTQLSDLIDQQTNPTIAPYAKVNEVTLRLTAQAPDEMQGQRLLDDL
TATIKARVGDYLYGYGDDNSLAAVVVQTLIDRQLTITAAESLTAGQFQSTLGSVPGVSAVFPGGFVTYAASAKHDLLGVS
QATIDHDGVVSAATAKEMASRSRERLDTDFSLSFTGVAGPDALEGQPAGTVWLGLAQRGQQPQAKLLHLTGTRSAIRERS
VLTGLDWLRRTLQKVK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=303890 UCCLBBS124_RS04355 WP_039105136.1 942771..944021(+) (cinA) [Levilactobacillus brevis strain UCCLBBS124]
GTGCAAGCAGAAATTATTGCGGTTGGTACAGAGATTTTACTCGGGCAAATTGTGGATACGAACTCTGCCTTCATTGCGCG
CGAACTGGCGGAAGCTGGGATTGAGGTGTATTACCATTCTCTAGTAGGTGATAACGCAACCCGGTTAACGGCTGTTGTTG
AACAAGCCCGTTCGCGGAGTGATTTAGTGATTATTAGTGGGGGATTAGGACCGACCAAAGATGATTTGACAAAACAAACG
GTCGCTCACTTGTTAGGCGTAAAGTTGGTTGAAGATGCGTTGGCAATGGCTAAGATTCGTCGCCGGTTTGCTATCAATGG
CCGTGAGATGACGCCTAATAATCGCCTACAAGCTTTATATCCAGCAGGCAGTCAGCCCTTAGCAAATCGGACTGGGTTAG
CTGTGGGAGCTTTTTATCAAGATCCTGATGGTGCGGACATCATGCTATTACCGGGACCACCAAGTGAGACTGAACCCATG
TTTCGTGAGCAAGCCTTACCCCTGCTGAAGCAAACATATCCACGAAGTGAGTACTTGTCTTCACGGGTACTTCGGTTCTT
TGGCATCGGCGAAAGTCAATTGGTCACTCAACTGAGTGATCTGATTGACCAGCAGACTAATCCGACCATCGCTCCTTATG
CTAAAGTTAATGAAGTAACGTTACGTTTAACCGCACAGGCCCCGGATGAGATGCAAGGGCAACGCCTCTTAGATGACTTA
ACGGCGACGATTAAGGCCCGCGTAGGGGATTATCTTTATGGTTATGGTGATGATAATTCATTGGCGGCAGTGGTGGTTCA
GACACTAATTGACCGTCAATTGACCATTACGGCTGCTGAGAGCTTAACGGCCGGTCAATTTCAAAGTACCTTGGGAAGTG
TTCCCGGTGTTTCGGCGGTTTTCCCTGGTGGTTTTGTCACCTATGCGGCCAGTGCCAAGCATGACTTATTGGGAGTCTCG
CAGGCCACGATTGATCATGATGGTGTGGTTAGTGCGGCGACAGCTAAGGAAATGGCATCACGTTCTCGAGAACGGTTGGA
TACTGATTTTTCGTTGAGCTTCACAGGAGTTGCTGGCCCGGACGCCTTGGAAGGCCAACCGGCTGGAACAGTCTGGTTAG
GTTTAGCGCAACGGGGGCAACAACCACAGGCAAAACTGTTACATTTGACGGGTACGCGATCGGCAATTCGGGAACGGAGT
GTCTTGACCGGGTTGGACTGGTTGCGACGAACATTGCAAAAAGTAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1PXC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

51.566

99.76

0.514
  cinA Streptococcus mitis NCTC 12261

49.644

100

0.502
  cinA Streptococcus mitis SK321

49.762

100

0.502
  cinA Streptococcus pneumoniae TIGR4

48.694

100

0.493
  cinA Streptococcus pneumoniae Rx1

48.694

100

0.493
  cinA Streptococcus pneumoniae R6

48.694

100

0.493
  cinA Streptococcus pneumoniae D39

48.456

100

0.49
  cinA Bacillus subtilis subsp. subtilis str. 168

47.7

99.279

0.474
  cinA Streptococcus suis isolate S10

44.231

100

0.442

Multiple sequence alignment