Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   UCCLBBS124_RS04360 Genome accession   NZ_CP031169
Coordinates   944115..945248 (+) Length   377 a.a.
NCBI ID   WP_039105138.1    Uniprot ID   A0AA41EQ60
Organism   Levilactobacillus brevis strain UCCLBBS124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 939115..950248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UCCLBBS124_RS04340 (UCCLBBS124_0859) yfmH 939758..941047 (+) 1290 WP_021742877.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  UCCLBBS124_RS04345 (UCCLBBS124_0860) - 941161..942066 (+) 906 WP_011668110.1 helix-turn-helix domain-containing protein -
  UCCLBBS124_RS04350 (UCCLBBS124_0861) pgsA 942128..942715 (+) 588 WP_011668109.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  UCCLBBS124_RS04355 (UCCLBBS124_0862) cinA 942771..944021 (+) 1251 WP_039105136.1 competence/damage-inducible protein A Machinery gene
  UCCLBBS124_RS04360 (UCCLBBS124_0863) recA 944115..945248 (+) 1134 WP_039105138.1 recombinase RecA Machinery gene
  UCCLBBS124_RS13570 (UCCLBBS124_0864) - 945331..945483 (-) 153 WP_164475119.1 hypothetical protein -
  UCCLBBS124_RS04365 (UCCLBBS124_0865) rny 945811..947370 (+) 1560 WP_011667971.1 ribonuclease Y -
  UCCLBBS124_RS04370 (UCCLBBS124_0866) - 947502..948296 (+) 795 WP_024525499.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40350.74 Da        Isoelectric Point: 5.3901

>NTDB_id=303891 UCCLBBS124_RS04360 WP_039105138.1 944115..945248(+) (recA) [Levilactobacillus brevis strain UCCLBBS124]
MADERQAALDKALKKIEKDFGKGSIMRLGDNSNLEVETVPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPAYATALGVNIDDLLLSQPDTGEQGLQIADALISSGAIDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQIKDGTDVIGNR
TRIKVVKNKVAPPFKRAEVDIMYGQGISQTGELLDMAVEKDIVDKSGSWYSYGEDRIGQGRENAKQYLADHPDMMAEVNQ
RVRAAYGVGDEEAAATKATETKTDAPKDKDKGKTKTKDKPADVTPGQIELAPDKSAK

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=303891 UCCLBBS124_RS04360 WP_039105138.1 944115..945248(+) (recA) [Levilactobacillus brevis strain UCCLBBS124]
ATGGCTGACGAACGACAAGCAGCGCTGGATAAAGCGCTGAAGAAGATTGAAAAAGACTTTGGTAAAGGCTCGATTATGCG
ATTAGGGGACAATAGTAACCTCGAAGTTGAGACCGTACCATCAGGCTCGTTAGCACTTGACGTTGCCTTGGGTGTCGGCG
GTTACCCTCGCGGACGGATTGTAGAAATTTATGGTCCAGAATCTTCTGGGAAGACGACCGTTGCTCTGCACGCAGTTGCC
GAGGTCCAAAAGCGTGGTGGAACAGCCGCCTATATTGATGCTGAAAATGCGTTGGATCCAGCCTATGCAACGGCATTAGG
GGTTAACATTGATGATTTATTGCTGTCGCAGCCAGATACTGGGGAACAAGGCTTGCAAATCGCTGATGCCTTGATTTCCA
GTGGTGCGATTGACATTGTCGTGGTTGATTCCGTGGCAGCCTTAGTGCCACGTGCTGAAATTGAAGGCGAAATGGGTGAT
GCTCACGTGGGTCTGCAAGCCCGATTGATGTCACAAGCCTTACGGAAGCTATCTGGGACCATCAATAAAACGAAGACAAT
CGCGTTATTTATCAATCAGATTCGGGAAAAAGTTGGTGTGATGTTTGGTAATCCAGAGACCACACCAGGTGGCCGGGCAC
TGAAATTCTATGCGACAGTGCGGTTAGAGGTACGACGGGCCGAACAGATTAAAGATGGCACGGATGTTATCGGTAACCGG
ACGCGAATCAAGGTCGTTAAGAACAAGGTTGCGCCACCATTTAAACGGGCCGAGGTTGATATCATGTACGGGCAAGGAAT
CTCACAAACCGGTGAATTGCTCGACATGGCGGTTGAGAAAGATATCGTTGATAAAAGCGGTTCTTGGTATTCTTATGGTG
AAGACCGAATTGGTCAAGGCCGAGAGAATGCCAAACAGTACTTGGCAGATCATCCAGATATGATGGCCGAAGTTAATCAA
CGTGTCCGGGCTGCTTACGGTGTTGGCGATGAAGAAGCCGCAGCGACTAAAGCAACTGAGACGAAGACTGATGCGCCTAA
AGACAAGGATAAAGGGAAGACAAAGACTAAAGATAAACCGGCCGATGTTACTCCCGGTCAGATTGAGTTAGCACCAGACA
AATCAGCTAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

83.908

92.308

0.775
  recA Bacillus subtilis subsp. subtilis str. 168

75.61

87.003

0.658
  recA Streptococcus pneumoniae D39

68.946

93.103

0.642
  recA Streptococcus pneumoniae R6

68.946

93.103

0.642
  recA Streptococcus pneumoniae TIGR4

68.946

93.103

0.642
  recA Streptococcus pneumoniae Rx1

68.946

93.103

0.642
  recA Streptococcus mitis SK321

70.554

90.981

0.642
  recA Streptococcus mitis NCTC 12261

70.175

90.716

0.637
  recA Streptococcus mutans UA159

66.947

94.695

0.634
  recA Streptococcus pyogenes NZ131

70.997

87.798

0.623
  recA Lactococcus lactis subsp. cremoris KW2

69.94

89.125

0.623
  recA Neisseria gonorrhoeae MS11

60.057

92.308

0.554
  recA Neisseria gonorrhoeae MS11

60.057

92.308

0.554
  recA Neisseria gonorrhoeae strain FA1090

60.057

92.308

0.554
  recA Ralstonia pseudosolanacearum GMI1000

62.918

87.268

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.424

87.533

0.546
  recA Vibrio cholerae strain A1552

62.539

85.676

0.536
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

85.676

0.536
  recA Pseudomonas stutzeri DSM 10701

57.971

91.512

0.531
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.162

86.737

0.531
  recA Acinetobacter baylyi ADP1

61.61

85.676

0.528
  recA Acinetobacter baumannii D1279779

60.681

85.676

0.52
  recA Glaesserella parasuis strain SC1401

60.125

85.146

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.359

87.268

0.509
  recA Helicobacter pylori 26695

56.97

87.533

0.499
  recA Helicobacter pylori strain NCTC11637

56.97

87.533

0.499

Multiple sequence alignment