Detailed information NTG0303891

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EQO00_RS05995
• Genome accession: NZ_CP035498
• Coordinates: 1246837..1247829 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 04-00955
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1241837..1252829

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQO00_RS05965 (EQO00_05975)	ispD	1241898..1242608 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EQO00_RS05970 (EQO00_05980)	ispF	1242608..1243087 (+)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EQO00_RS05975 (EQO00_05985)	truD	1243084..1244133 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
EQO00_RS05980 (EQO00_05990)	surE	1244114..1244875 (+)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
EQO00_RS05985 (EQO00_05995)	pcm	1244869..1245495 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EQO00_RS05990 (EQO00_06000)	nlpD	1245680..1246774 (+)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
EQO00_RS05995 (EQO00_06005)	rpoS	1246837..1247829 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EQO00_RS06000 (EQO00_06010)	-	1248000..1248551 (-)	552	WP_001179443.1	flavodoxin family protein	-
EQO00_RS06005 (EQO00_06015)	-	1248776..1249819 (+)	1044	WP_001161577.1	MBL fold metallo-hydrolase	-
EQO00_RS06010 (EQO00_06020)	ygbN	1249962..1251326 (-)	1365	WP_000104433.1	GntP family transporter	-
EQO00_RS06015 (EQO00_06025)	ygbM	1251415..1252191 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=303891 EQO00_RS05995 WP_000081550.1 1246837..1247829(+) (rpoS) [Escherichia coli strain 04-00955]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=303891 EQO00_RS05995 WP_000081550.1 1246837..1247829(+) (rpoS) [Escherichia coli strain 04-00955]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715