Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   soil367_RS11590 Genome accession   NZ_CP031093
Coordinates   2602557..2603777 (+) Length   406 a.a.
NCBI ID   WP_136549249.1    Uniprot ID   A0A4V1D8V8
Organism   Hydrocarboniclastica marina strain soil36-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2597557..2608777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  soil367_RS11555 (soil367_11650) - 2597620..2597970 (+) 351 WP_136549245.1 hypothetical protein -
  soil367_RS11560 (soil367_11655) - 2598109..2598408 (+) 300 WP_136549246.1 MbcA/ParS/Xre antitoxin family protein -
  soil367_RS11570 (soil367_11665) - 2598701..2598955 (-) 255 WP_136549247.1 hypothetical protein -
  soil367_RS11580 (soil367_11675) - 2599555..2600055 (-) 501 WP_281283906.1 pilin -
  soil367_RS11585 (soil367_11680) pilB 2600476..2602191 (+) 1716 WP_136549248.1 type IV-A pilus assembly ATPase PilB Machinery gene
  soil367_RS11590 (soil367_11685) pilC 2602557..2603777 (+) 1221 WP_136549249.1 type II secretion system F family protein Machinery gene
  soil367_RS11595 (soil367_11690) pilD 2603889..2604767 (+) 879 WP_136549250.1 A24 family peptidase Machinery gene
  soil367_RS11600 (soil367_11695) coaE 2604958..2605557 (+) 600 WP_136549251.1 dephospho-CoA kinase -
  soil367_RS11605 (soil367_11700) yacG 2605608..2605817 (+) 210 WP_136549252.1 DNA gyrase inhibitor YacG -
  soil367_RS11610 (soil367_11705) - 2605978..2606421 (+) 444 WP_136549253.1 HIT family protein -
  soil367_RS11615 (soil367_11710) - 2606492..2607613 (+) 1122 WP_136549254.1 hypothetical protein -
  soil367_RS11620 (soil367_11715) tsaA 2607657..2608331 (+) 675 WP_246065266.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44342.10 Da        Isoelectric Point: 9.0832

>NTDB_id=303306 soil367_RS11590 WP_136549249.1 2602557..2603777(+) (pilC) [Hydrocarboniclastica marina strain soil36-7]
MAAKAEKVSTFIWEGKDRKGNKAHGEITGTNPALIKAQLRKQGMMPQKVKKKPKPLFGGKKKITPFDIALFTRQLATMMR
AGVPLVQSFDIVSDGAENAALQELIQNIRNDVASGNSFANALRKFPRHFDDLYCNLVDSGEKAGALESLLDRIATYLEKT
ELLKKKIKKAMTYPIAVVVVAIIVTAILLVKVVPQFETLFQGFGADLPVFTQMVVNLSDWMQTWWFVILIGIVGTVMGFK
EAVRRSQKFSDAVDKYILKLPVVGDILDNSAVAKFARVLSTTFAAGVPLVDALDSVAGATGNAIYRDAVFKIKDDVSSGT
QLQVSMKQTDVFPTMAVQLTAIGEETGNLDEMLSKVAEHYEAMVDDMVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=303306 soil367_RS11590 WP_136549249.1 2602557..2603777(+) (pilC) [Hydrocarboniclastica marina strain soil36-7]
ATGGCAGCGAAAGCGGAAAAAGTATCCACCTTCATCTGGGAAGGCAAAGACCGCAAGGGTAACAAAGCCCACGGCGAAAT
CACTGGCACCAACCCGGCTCTGATCAAGGCTCAGCTGCGCAAGCAGGGCATGATGCCGCAGAAGGTCAAAAAGAAACCCA
AGCCTCTTTTTGGCGGCAAAAAGAAGATTACACCCTTTGATATTGCCCTGTTCACACGCCAACTGGCAACCATGATGCGC
GCGGGCGTTCCGCTGGTGCAGTCGTTTGATATTGTTTCTGACGGTGCGGAAAACGCTGCGCTGCAGGAACTGATCCAGAA
TATTCGCAATGATGTTGCTTCGGGTAACAGTTTCGCCAATGCGTTGCGCAAGTTTCCGCGACACTTTGATGATCTGTATT
GCAATCTGGTGGACTCGGGAGAGAAGGCTGGTGCGCTTGAAAGCTTGCTTGATCGCATCGCAACCTATCTTGAAAAAACA
GAACTCCTTAAGAAAAAAATCAAAAAGGCGATGACGTATCCGATCGCCGTTGTCGTAGTCGCAATCATCGTGACGGCGAT
TCTGCTTGTTAAAGTGGTACCTCAGTTTGAAACCCTGTTCCAAGGGTTCGGTGCCGACCTTCCGGTCTTTACTCAAATGG
TAGTAAACCTTTCAGACTGGATGCAGACGTGGTGGTTCGTAATACTTATTGGTATTGTCGGAACCGTAATGGGCTTCAAA
GAAGCTGTGCGCCGATCCCAGAAGTTTTCCGATGCAGTGGACAAATACATCCTCAAGCTCCCCGTGGTCGGCGACATTCT
CGACAATTCAGCGGTAGCGAAATTCGCCCGCGTTCTCTCTACGACTTTTGCTGCAGGGGTTCCTCTGGTGGATGCGCTCG
ATTCTGTGGCCGGAGCCACGGGTAACGCGATCTATCGGGATGCCGTATTCAAGATCAAAGATGACGTCTCCAGCGGTACT
CAGCTACAGGTTTCTATGAAACAGACCGACGTATTCCCAACTATGGCGGTCCAGCTGACAGCTATCGGCGAGGAAACCGG
TAACCTGGATGAGATGCTGAGCAAAGTTGCAGAACACTACGAGGCCATGGTCGACGACATGGTCGACAATCTCACAGCCC
TGATGGAACCCATGATCATGGCGGTGTTGGGGGTTCTGGTTGGTGGTTTGATAATCGCCATGTACCTGCCGATATTCCAG
ATGGGCCAGGTCGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V1D8V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

68.395

99.754

0.682
  pilC Acinetobacter baumannii D1279779

59.158

99.507

0.589
  pilC Acinetobacter baylyi ADP1

57.843

100

0.581
  pilC Legionella pneumophila strain ERS1305867

54.156

97.783

0.53
  pilG Neisseria gonorrhoeae MS11

42.04

99.015

0.416
  pilG Neisseria meningitidis 44/76-A

41.791

99.015

0.414
  pilC Vibrio campbellii strain DS40M4

38.575

100

0.387
  pilC Vibrio cholerae strain A1552

38.177

100

0.382
  pilC Thermus thermophilus HB27

35.337

100

0.362

Multiple sequence alignment