Detailed information NTG0303307

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: soil367_RS11595
• Genome accession: NZ_CP031093
• Coordinates: 2603889..2604767 (+)
• Length: 292 a.a.
• NCBI ID: WP_136549250.1
• Uniprot ID: A0A4P7XHM4
• Organism: Hydrocarboniclastica marina strain soil36-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2598889..2609767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
soil367_RS11580 (soil367_11675)	-	2599555..2600055 (-)	501	WP_281283906.1	pilin	-
soil367_RS11585 (soil367_11680)	pilB	2600476..2602191 (+)	1716	WP_136549248.1	type IV-A pilus assembly ATPase PilB	Machinery gene
soil367_RS11590 (soil367_11685)	pilC	2602557..2603777 (+)	1221	WP_136549249.1	type II secretion system F family protein	Machinery gene
soil367_RS11595 (soil367_11690)	pilD	2603889..2604767 (+)	879	WP_136549250.1	A24 family peptidase	Machinery gene
soil367_RS11600 (soil367_11695)	coaE	2604958..2605557 (+)	600	WP_136549251.1	dephospho-CoA kinase	-
soil367_RS11605 (soil367_11700)	yacG	2605608..2605817 (+)	210	WP_136549252.1	DNA gyrase inhibitor YacG	-
soil367_RS11610 (soil367_11705)	-	2605978..2606421 (+)	444	WP_136549253.1	HIT family protein	-
soil367_RS11615 (soil367_11710)	-	2606492..2607613 (+)	1122	WP_136549254.1	hypothetical protein	-
soil367_RS11620 (soil367_11715)	tsaA	2607657..2608331 (+)	675	WP_246065266.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-

Sequence

Protein

• Length: 292 a.a.
• Molecular weight: 32269.43 Da
• Isoelectric Point: 6.2286

>NTDB_id=303307 soil367_RS11595 WP_136549250.1 2603889..2604767(+) (pilD) [Hydrocarboniclastica marina strain soil36-7]
MDLIELFIASPAYFYPVVFVVSLCIGSFLNVVILRLPKMMQAKWRCDCEEFLEIPREKRQPPSDLSLSHPNSTCPNCKHE
IRPWENIPVISYLALGGKCGKCKTRISPRYPIIEAVTALLSLGTVLMLGPSVGSLLALILVWSLVALTFIDFDTQLLPDD
ITLPLLWLGLVINYFEILVPFSSAFWGAIFGYLALWLVYHAFRLITGKEGMGYGDFKLLAVLGAWLGWEMLPAVILLSSL
VGAGVGISLILFRGQGREVPIPFGPYLAAAGIIALWFGPEIQAAWFSYLGVS

Nucleotide

• Length: 879 bp

>NTDB_id=303307 soil367_RS11595 WP_136549250.1 2603889..2604767(+) (pilD) [Hydrocarboniclastica marina strain soil36-7]
ATGGATCTGATCGAACTGTTCATCGCCAGCCCGGCCTATTTCTACCCGGTCGTGTTTGTGGTCTCGCTCTGCATTGGCAG
TTTCCTGAATGTGGTTATTTTACGCCTGCCCAAGATGATGCAGGCCAAGTGGCGCTGTGATTGCGAGGAGTTTCTGGAGA
TTCCGCGCGAAAAGCGTCAGCCGCCGTCAGACCTGAGTCTTTCTCACCCCAATTCGACCTGCCCGAACTGCAAGCATGAG
ATCCGCCCCTGGGAGAACATCCCAGTAATCAGTTATCTGGCGCTCGGCGGGAAATGTGGCAAATGCAAAACCCGGATCTC
GCCCCGCTATCCCATTATCGAGGCGGTCACGGCCCTGCTCTCTCTTGGAACCGTTCTGATGCTGGGCCCCTCGGTTGGCT
CCCTCCTTGCCCTGATTCTGGTCTGGTCGCTGGTGGCGTTGACCTTTATTGATTTCGATACCCAGCTTCTGCCCGACGAT
ATCACCCTGCCGCTCCTGTGGCTGGGGCTGGTAATCAACTATTTTGAGATTTTGGTGCCATTCAGCAGTGCGTTCTGGGG
CGCCATTTTTGGTTACCTCGCACTCTGGCTGGTCTACCACGCTTTCCGTCTGATCACCGGTAAGGAAGGCATGGGTTATG
GAGACTTTAAACTGCTGGCGGTTCTGGGCGCGTGGCTTGGCTGGGAAATGCTACCGGCTGTTATTTTGTTGTCGTCACTG
GTCGGCGCCGGGGTTGGCATCAGCCTGATCCTGTTCCGCGGCCAGGGCCGGGAGGTACCGATTCCGTTCGGGCCGTACCT
TGCAGCGGCGGGTATCATTGCCCTCTGGTTTGGTCCTGAGATTCAGGCCGCATGGTTCTCTTACCTGGGGGTTTCCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A4P7XHM4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	53.929	95.89	0.517
pilD	Acinetobacter nosocomialis M2	53.571	95.89	0.514
pilD	Vibrio campbellii strain DS40M4	49.65	97.945	0.486
pilD	Vibrio cholerae strain A1552	49.645	96.575	0.479
pilD	Neisseria gonorrhoeae MS11	46.097	92.123	0.425