Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   DS746_RS07860 Genome accession   NZ_CP030888
Coordinates   1519107..1520519 (-) Length   470 a.a.
NCBI ID   WP_259831614.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CS19     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1514107..1525519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS746_RS07835 (DS746_1541) - 1514431..1515195 (+) 765 WP_002855301.1 TSUP family transporter -
  DS746_RS07840 (DS746_1542) ctsF 1515188..1516369 (-) 1182 WP_002921263.1 type II secretion system F family protein Machinery gene
  DS746_RS07845 (DS746_1543) ctsE 1516366..1517925 (-) 1560 WP_032588785.1 GspE/PulE family protein Machinery gene
  DS746_RS07850 (DS746_1544) ctsX 1517915..1518502 (-) 588 WP_002921278.1 hypothetical protein Machinery gene
  DS746_RS07855 (DS746_1545) ctsP 1518506..1519114 (-) 609 WP_002921280.1 ATP-binding protein Machinery gene
  DS746_RS07860 (DS746_1546) ctsD 1519107..1520519 (-) 1413 WP_259831614.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  DS746_RS07865 (DS746_1547) ctsR 1520497..1520808 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  DS746_RS07870 (DS746_1548) nifJ 1520832..1524392 (-) 3561 WP_002921284.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  DS746_RS07875 (DS746_1549) - 1524485..1525126 (-) 642 WP_002921286.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53076.65 Da        Isoelectric Point: 6.4035

>NTDB_id=302098 DS746_RS07860 WP_259831614.1 1519107..1520519(-) (ctsD) [Campylobacter jejuni strain CS19]
MIRLILINILFCHYLYALDCQKCLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESFK
GTENGTTVSESYNNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=302098 DS746_RS07860 WP_259831614.1 1519107..1520519(-) (ctsD) [Campylobacter jejuni strain CS19]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGTGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAATTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGTATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGATGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATCATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAACAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTCAAAGAAAGTTTTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTATAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGAATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
TCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAACGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

98.936

100

0.989

Multiple sequence alignment