Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DRA75_RS02645 Genome accession   NZ_CP030816
Coordinates   518436..519104 (+) Length   222 a.a.
NCBI ID   WP_196083692.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 16-92     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513436..524104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRA75_RS02625 (DRA75_03020) - 514226..514558 (+) 333 WP_002226445.1 hypothetical protein -
  DRA75_RS02630 (DRA75_03025) - 514890..515399 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  DRA75_RS02635 (DRA75_03035) - 515971..516558 (-) 588 WP_002248497.1 superoxide dismutase -
  DRA75_RS02640 (DRA75_03045) dnaB 516721..518127 (+) 1407 WP_002248498.1 replicative DNA helicase -
  DRA75_RS02645 (DRA75_03050) pilH 518436..519104 (+) 669 WP_196083692.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DRA75_RS02650 (DRA75_03055) pilV 519128..519742 (+) 615 WP_065826234.1 type IV pilus modification protein PilV Machinery gene
  DRA75_RS02655 (DRA75_03060) pilJ 519739..520677 (+) 939 WP_042744699.1 PilW family protein Machinery gene
  DRA75_RS02660 (DRA75_03065) pilK 520656..521255 (+) 600 WP_002248501.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DRA75_RS02665 (DRA75_03070) pilX 521260..521733 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24712.28 Da        Isoelectric Point: 9.7530

>NTDB_id=301616 DRA75_RS02645 WP_196083692.1 518436..519104(+) (pilH) [Neisseria meningitidis strain 16-92]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTAGRVVWTFNQNGTFGYST
NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRGDRRTMCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=301616 DRA75_RS02645 WP_196083692.1 518436..519104(+) (pilH) [Neisseria meningitidis strain 16-92]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGGCCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAAATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-204)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

83.71

99.55

0.833

Multiple sequence alignment