Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   DRA75_RS02655 Genome accession   NZ_CP030816
Coordinates   519739..520677 (+) Length   312 a.a.
NCBI ID   WP_042744699.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 16-92     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514739..525677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRA75_RS02630 (DRA75_03025) - 514890..515399 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  DRA75_RS02635 (DRA75_03035) - 515971..516558 (-) 588 WP_002248497.1 superoxide dismutase -
  DRA75_RS02640 (DRA75_03045) dnaB 516721..518127 (+) 1407 WP_002248498.1 replicative DNA helicase -
  DRA75_RS02645 (DRA75_03050) pilH 518436..519104 (+) 669 WP_196083692.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DRA75_RS02650 (DRA75_03055) pilV 519128..519742 (+) 615 WP_065826234.1 type IV pilus modification protein PilV Machinery gene
  DRA75_RS02655 (DRA75_03060) pilJ 519739..520677 (+) 939 WP_042744699.1 PilW family protein Machinery gene
  DRA75_RS02660 (DRA75_03065) pilK 520656..521255 (+) 600 WP_002248501.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DRA75_RS02665 (DRA75_03070) pilX 521260..521733 (+) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  DRA75_RS02670 (DRA75_03090) - 523839..524267 (-) 429 Protein_513 AzlC family ABC transporter permease -
  DRA75_RS02675 (DRA75_03095) dut 524410..524862 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34204.91 Da        Isoelectric Point: 9.6625

>NTDB_id=301618 DRA75_RS02655 WP_042744699.1 519739..520677(+) (pilJ) [Neisseria meningitidis strain 16-92]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLSAQQDLRNAATLIVRDARMAGGFG
CFNMSEHPATDVVSDVAQKNRSFSLKRNGIDKLIPIAESSNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCSKIAK
LGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLAKKVRRMDVRYIYVS
GCPEDDDAGKEETFKYTDKFDKSKNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=301618 DRA75_RS02655 WP_042744699.1 519739..520677(+) (pilJ) [Neisseria meningitidis strain 16-92]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTTACATCTCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTTCCGCACAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCAGGGGGCTTCGGT
TGTTTCAATATGTCCGAGCATCCTGCAACTGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTTCTTTTTCCTTAAAAAG
GAACGGTATAGATAAACTTATTCCCATAGCGGAATCTTCAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTTCCAAAATAGCAAAA
CTGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGG
ATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAGACGTATGGATGTGCGGTATATCTATGTTTCC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCGACAAATCCAAAAATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

80.38

100

0.814

Multiple sequence alignment