Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQ228_RS09075 Genome accession   NZ_CP030250
Coordinates   1768280..1768672 (-) Length   130 a.a.
NCBI ID   WP_011226610.1    Uniprot ID   A0A3G6K2H6
Organism   Streptococcus thermophilus strain CS20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1763280..1773672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS09040 dapD 1763559..1764257 (-) 699 WP_002951996.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  DQ228_RS10200 - 1764343..1765097 (-) 755 Protein_1768 HAD family hydrolase -
  DQ228_RS09055 - 1765212..1766045 (-) 834 WP_024704236.1 putative RNA methyltransferase -
  DQ228_RS09065 - 1766414..1766606 (+) 193 Protein_1770 class IIb bacteriocin, lactobin A/cerein 7B family -
  DQ228_RS10205 - 1766659..1766922 (+) 264 WP_014608734.1 hypothetical protein -
  DQ228_RS09070 tadA 1767003..1767521 (-) 519 WP_014608735.1 tRNA adenosine(34) deaminase TadA -
  DQ228_RS09075 ssbA 1768280..1768672 (-) 393 WP_011226610.1 single-stranded DNA-binding protein Machinery gene
  DQ228_RS09080 - 1768878..1769105 (-) 228 WP_011226611.1 sulfurtransferase TusA family protein -
  DQ228_RS09085 - 1769120..1770151 (-) 1032 WP_237788608.1 YeeE/YedE family protein -
  DQ228_RS09090 ytpR 1770289..1770912 (-) 624 WP_002952017.1 YtpR family tRNA-binding protein -
  DQ228_RS09095 - 1770922..1771236 (-) 315 WP_011226613.1 thioredoxin family protein -
  DQ228_RS09100 - 1771233..1771517 (-) 285 WP_011681678.1 DUF4651 domain-containing protein -
  DQ228_RS09105 pepA 1771617..1772684 (+) 1068 WP_002952022.1 glutamyl aminopeptidase -
  DQ228_RS09110 proC 1772700..1773470 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14773.70 Da        Isoelectric Point: 5.9275

>NTDB_id=300447 DQ228_RS09075 WP_011226610.1 1768280..1768672(-) (ssbA) [Streptococcus thermophilus strain CS20]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide


Download         Length: 393 bp        

>NTDB_id=300447 DQ228_RS09075 WP_011226610.1 1768280..1768672(-) (ssbA) [Streptococcus thermophilus strain CS20]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT
GGGGCCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G6K2H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

79.389

100

0.8
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.769
  ssbB/cilA Streptococcus pneumoniae TIGR4

74.809

100

0.754
  ssbB/cilA Streptococcus mitis SK321

74.046

100

0.746
  ssbB/cilA Streptococcus pneumoniae R6

74.046

100

0.746
  ssbB/cilA Streptococcus pneumoniae Rx1

74.046

100

0.746
  ssbB/cilA Streptococcus pneumoniae D39

74.046

100

0.746
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.731
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

86.154

0.538
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

81.538

0.385
  ssb Latilactobacillus sakei subsp. sakei 23K

46.226

81.538

0.377

Multiple sequence alignment