Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | DQW72_RS06290 | Genome accession | NZ_CP030246 |
| Coordinates | 1273365..1273682 (+) | Length | 105 a.a. |
| NCBI ID | WP_001831271.1 | Uniprot ID | A0A9Q5JKE9 |
| Organism | Staphylococcus epidermidis strain CSF41498 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1268365..1278682
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQW72_RS06260 (DQW72_06235) | - | 1269142..1269342 (+) | 201 | WP_001831138.1 | YqgQ family protein | - |
| DQW72_RS06265 (DQW72_06240) | - | 1269342..1270328 (+) | 987 | WP_001831113.1 | ROK family glucokinase | - |
| DQW72_RS06270 (DQW72_06245) | - | 1270328..1270654 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| DQW72_RS06275 (DQW72_06250) | - | 1270654..1271277 (+) | 624 | WP_001831016.1 | MBL fold metallo-hydrolase | - |
| DQW72_RS06280 (DQW72_06255) | comGA | 1271334..1272308 (+) | 975 | WP_001831109.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQW72_RS06285 (DQW72_06260) | comGB | 1272280..1273347 (+) | 1068 | WP_001831131.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DQW72_RS06290 (DQW72_06265) | comGC | 1273365..1273682 (+) | 318 | WP_001831271.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQW72_RS06295 (DQW72_06270) | comGD | 1273672..1274109 (+) | 438 | WP_001831025.1 | competence type IV pilus minor pilin ComGD | - |
| DQW72_RS06300 (DQW72_06275) | - | 1274096..1274389 (+) | 294 | WP_001831116.1 | hypothetical protein | - |
| DQW72_RS06305 (DQW72_06280) | - | 1274313..1274804 (+) | 492 | WP_002440043.1 | competence type IV pilus minor pilin ComGF | - |
| DQW72_RS06315 (DQW72_06290) | - | 1274969..1275481 (+) | 513 | WP_002485736.1 | shikimate kinase | - |
| DQW72_RS06320 (DQW72_06295) | gcvT | 1275699..1276790 (+) | 1092 | WP_049392313.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| DQW72_RS06325 (DQW72_06300) | gcvPA | 1276810..1278156 (+) | 1347 | WP_049392315.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11491.58 Da Isoelectric Point: 9.7429
>NTDB_id=300384 DQW72_RS06290 WP_001831271.1 1273365..1273682(+) (comGC) [Staphylococcus epidermidis strain CSF41498]
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
Nucleotide
Download Length: 318 bp
>NTDB_id=300384 DQW72_RS06290 WP_001831271.1 1273365..1273682(+) (comGC) [Staphylococcus epidermidis strain CSF41498]
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
87.255 |
97.143 |
0.848 |
| comGC | Staphylococcus aureus N315 |
87.255 |
97.143 |
0.848 |
| comGC/cglC | Streptococcus mitis SK321 |
44.66 |
98.095 |
0.438 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.681 |
89.524 |
0.4 |
| comYC | Streptococcus mutans UA159 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus mutans UA140 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
46.512 |
81.905 |
0.381 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
47.561 |
78.095 |
0.371 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
50 |
74.286 |
0.371 |
| comYC | Streptococcus suis isolate S10 |
48.718 |
74.286 |
0.362 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
86.667 |
0.362 |