Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DP112_RS09810 Genome accession   NZ_CP030125
Coordinates   1984306..1984722 (-) Length   138 a.a.
NCBI ID   WP_114866882.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1979306..1989722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS09770 (DP112_09775) - 1980625..1980972 (-) 348 WP_024406265.1 hypothetical protein -
  DP112_RS11430 (DP112_09780) - 1981095..1981424 (-) 330 WP_114866878.1 HNH endonuclease -
  DP112_RS09780 (DP112_09785) - 1981421..1981711 (-) 291 WP_114866879.1 hypothetical protein -
  DP112_RS09785 (DP112_09790) - 1981878..1982453 (-) 576 WP_024406262.1 tyrosine-type recombinase/integrase -
  DP112_RS09790 (DP112_09795) - 1982582..1983046 (-) 465 WP_024414945.1 hypothetical protein -
  DP112_RS11110 - 1983098..1983250 (-) 153 WP_164503932.1 hypothetical protein -
  DP112_RS11115 - 1983219..1983368 (-) 150 WP_164503933.1 hypothetical protein -
  DP112_RS09795 (DP112_09800) - 1983382..1983777 (-) 396 WP_114866880.1 hypothetical protein -
  DP112_RS09800 (DP112_09805) - 1983761..1984030 (-) 270 WP_114866881.1 hypothetical protein -
  DP112_RS09805 (DP112_09810) - 1984027..1984296 (-) 270 WP_044758399.1 hypothetical protein -
  DP112_RS09810 (DP112_09815) ssb 1984306..1984722 (-) 417 WP_114866882.1 single-stranded DNA-binding protein Machinery gene
  DP112_RS09815 (DP112_09820) - 1984719..1984985 (-) 267 WP_114866883.1 hypothetical protein -
  DP112_RS09820 (DP112_09825) - 1984982..1985185 (-) 204 WP_105248998.1 hypothetical protein -
  DP112_RS11120 - 1985186..1985362 (-) 177 WP_164503934.1 hypothetical protein -
  DP112_RS09825 (DP112_09830) - 1985362..1985766 (-) 405 WP_114866884.1 YopX family protein -
  DP112_RS09830 (DP112_09835) - 1985906..1986388 (-) 483 WP_164503935.1 DUF1642 domain-containing protein -
  DP112_RS09835 (DP112_09840) - 1986381..1986737 (-) 357 WP_114866886.1 hypothetical protein -
  DP112_RS09840 (DP112_09845) - 1986748..1987422 (-) 675 WP_114866887.1 DNA methyltransferase -
  DP112_RS09845 (DP112_09850) - 1987415..1988857 (-) 1443 WP_241146856.1 DNA cytosine methyltransferase -
  DP112_RS11125 - 1988978..1989151 (-) 174 WP_164503936.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15771.60 Da        Isoelectric Point: 5.7350

>NTDB_id=299505 DP112_RS09810 WP_114866882.1 1984306..1984722(-) (ssb) [Streptococcus suis strain HA1003]
MINNVVLVGRLTRDVELRYTPSNQAVATFTLAVNRNFKNQSTGEREADFINCVMWRQQAENLANWTKKGHLIGITGRIQT
RSYENQQGQRVYVTEVVAESFQVFEKRDNTANHTSMEDQMPPNFSGPTMDINDDGLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=299505 DP112_RS09810 WP_114866882.1 1984306..1984722(-) (ssb) [Streptococcus suis strain HA1003]
ATGATAAATAATGTTGTATTGGTTGGTAGATTGACGAGGGACGTAGAGCTACGTTATACACCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAATCGACAGGAGAGCGGGAAGCTGACTTTATCAATTGCGTGA
TGTGGCGACAGCAGGCTGAGAATTTAGCCAACTGGACTAAGAAAGGTCATCTGATTGGTATTACAGGTCGAATTCAGACC
AGAAGCTATGAAAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTTGTTGCAGAAAGTTTCCAGGTATTTGAAAAGCG
TGATAACACTGCTAATCATACAAGCATGGAAGACCAAATGCCACCCAATTTCAGCGGTCCTACAATGGATATCAATGATG
ACGGATTGCCGTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

50.575

100

0.638
  ssbA Bacillus subtilis subsp. subtilis str. 168

73.148

78.261

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.944

77.536

0.449
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.553

100

0.435
  ssbB/cilA Streptococcus mitis NCTC 12261

41.844

100

0.428
  ssbB/cilA Streptococcus pneumoniae R6

41.844

100

0.428
  ssbB/cilA Streptococcus mitis SK321

41.844

100

0.428
  ssbB/cilA Streptococcus pneumoniae Rx1

41.844

100

0.428
  ssbB/cilA Streptococcus pneumoniae D39

41.844

100

0.428
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.351

80.435

0.413
  ssbA Streptococcus mutans UA159

45.946

80.435

0.37

Multiple sequence alignment