Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   DOZ91_RS16680 Genome accession   NZ_CP030063
Coordinates   3531911..3532273 (+) Length   120 a.a.
NCBI ID   WP_053536875.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain ZB201705     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3526911..3537273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOZ91_RS16650 (DOZ91_17020) - 3527706..3528544 (+) 839 Protein_3288 flagellar hook-basal body protein -
  DOZ91_RS16655 (DOZ91_17025) - 3528592..3529434 (+) 843 WP_127777636.1 flagellar hook-basal body protein -
  DOZ91_RS16660 (DOZ91_17030) - 3529603..3529857 (+) 255 WP_053536878.1 DNA-directed RNA polymerase subunit beta -
  DOZ91_RS16665 (DOZ91_17035) fabZ 3529985..3530413 (+) 429 WP_127777637.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DOZ91_RS16670 (DOZ91_17040) - 3530703..3531002 (+) 300 WP_127777638.1 hypothetical protein -
  DOZ91_RS16675 (DOZ91_17045) - 3531117..3531551 (-) 435 WP_053536876.1 YwpF family protein -
  DOZ91_RS16680 (DOZ91_17050) ssbB 3531911..3532273 (+) 363 WP_053536875.1 single-stranded DNA-binding protein Machinery gene
  DOZ91_RS16685 (DOZ91_17055) - 3532712..3533716 (+) 1005 WP_164855063.1 ABC transporter ATP-binding protein -
  DOZ91_RS16690 (DOZ91_17060) - 3533697..3534665 (+) 969 WP_127777640.1 dipeptide ABC transporter ATP-binding protein -
  DOZ91_RS16695 (DOZ91_17065) - 3534708..3536324 (+) 1617 WP_127777641.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13658.54 Da        Isoelectric Point: 9.6262

>NTDB_id=298861 DOZ91_RS16680 WP_053536875.1 3531911..3532273(+) (ssbB) [Peribacillus frigoritolerans strain ZB201705]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGAIIGITGRIQTR
RYENQEGKYVYVTEVVSERVQFIGTKQNDGKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=298861 DOZ91_RS16680 WP_053536875.1 3531911..3532273(+) (ssbB) [Peribacillus frigoritolerans strain ZB201705]
ATGATTAACCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCAGAATTAAGATACACACCTGATGGCAAGGCTGTTTC
CAATATCACATTAGCGGTCAACCGGAACTTCCGTAATACTGTCGGTAACTATGAGGCAGACTTTGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAAGGAGCCATAATCGGCATAACTGGCAGAATACAAACAAGG
AGATACGAAAATCAGGAGGGTAAATATGTATATGTAACTGAAGTGGTCTCCGAGAGGGTTCAATTCATCGGAACAAAACA
AAATGATGGTAAGCCCAAGGATTTTGAACATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.649

95

0.567
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

88.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

52.066

100

0.525
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis SK321

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae Rx1

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae D39

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae R6

41.509

88.333

0.367
  ssbA Streptococcus mutans UA159

41.509

88.333

0.367

Multiple sequence alignment