Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DOM24_RS01190 Genome accession   NZ_CP030031
Coordinates   260434..261660 (-) Length   408 a.a.
NCBI ID   WP_005016988.1    Uniprot ID   A0A062BT18
Organism   Acinetobacter radioresistens strain LH6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 255434..266660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS14600 - 256617..256754 (+) 138 WP_005405738.1 hypothetical protein -
  DOM24_RS01165 (DOM24_01165) - 256822..257145 (+) 324 WP_005016998.1 pyrimidine/purine nucleoside phosphorylase -
  DOM24_RS01170 (DOM24_01170) rlmB 257249..258004 (+) 756 WP_111280217.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  DOM24_RS01175 (DOM24_01175) - 258029..258964 (+) 936 WP_101235097.1 DMT family transporter -
  DOM24_RS01180 (DOM24_01180) coaE 258961..259572 (-) 612 WP_005016991.1 dephospho-CoA kinase -
  DOM24_RS01185 (DOM24_01185) pilD 259574..260434 (-) 861 WP_111280219.1 A24 family peptidase Machinery gene
  DOM24_RS01190 (DOM24_01190) pilC 260434..261660 (-) 1227 WP_005016988.1 type II secretion system F family protein Machinery gene
  DOM24_RS01195 (DOM24_01195) pilB 261690..263399 (-) 1710 WP_005406017.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DOM24_RS01200 (DOM24_01200) tpiA 263688..264482 (+) 795 WP_005023075.1 triose-phosphate isomerase -
  DOM24_RS01205 (DOM24_01205) secG 264493..264822 (+) 330 WP_046206287.1 preprotein translocase subunit SecG -
  DOM24_RS01225 (DOM24_01225) rimP 265449..265973 (+) 525 WP_111280221.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45019.50 Da        Isoelectric Point: 9.9504

>NTDB_id=298561 DOM24_RS01190 WP_005016988.1 260434..261660(-) (pilC) [Acinetobacter radioresistens strain LH6]
MAVKKAQMMPTFAYDGVDRKGIKVKGELTAKNMALAKVTLRKQGITIKTIREKRRNILEGLMKKRVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKAEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSNWMQKYWFILIIAIAALIF
GFLEAKKRSQKFRDALDRMALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRASNRFPPMAVQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=298561 DOM24_RS01190 WP_005016988.1 260434..261660(-) (pilC) [Acinetobacter radioresistens strain LH6]
ATGGCAGTCAAAAAAGCACAAATGATGCCGACTTTTGCTTATGACGGCGTCGACCGTAAAGGAATTAAAGTTAAAGGGGA
GCTGACAGCCAAGAATATGGCGTTGGCTAAGGTGACTTTGCGCAAGCAAGGAATAACTATCAAAACCATTCGGGAAAAAC
GTCGCAATATTCTAGAAGGCTTGATGAAGAAAAGGGTTTCTACACTAGATATCACTATCTTTACACGTCAGCTGGCCACC
ATGATGAAAGCGGGTGTTCCCCTTGTACAAGGCTTTGAAATTGTTGCTGAAGGTCTTGAAAATCCGGCTATGCGTGAAGT
GGTTTTGGGTATTAAGGCTGAAGTTGAAGGGGGCAATACATTTGCCGGTGCACTGCGTAAATATCCCCAATATTTTGACA
ACCTGTTTTGCTCACTGGTCGAATCTGGTGAACAGTCTGGTGCACTTGAGACCATGCTCGACCGGGTGGCCATCTATAAA
GAAAAGAGTGAACTTCTCAAGCAGAAAATTAAAAAGGCGATGAAATATCCCGCCACAGTTATTGTGGTTGCGGTGATTGT
AACCATTATTCTGATGGTTAAGGTAGTTCCGGTATTCCAGGACCTGTTTAGCTCGTTTGGTGCAGATCTGCCTGCATTTA
CCCAGATGGTTGTCAATATGTCGAACTGGATGCAGAAGTACTGGTTTATTCTCATTATCGCAATTGCTGCTCTTATTTTC
GGTTTTCTTGAAGCCAAAAAGCGAAGCCAGAAGTTCCGTGATGCGCTTGACAGAATGGCTCTTAAACTGCCAATTTTTGG
TGATCTGGTCTATAAAGCAATTATTGCCCGTTATAGCCGTACGCTGGCAACCACATTTGCAGCCGGCGTACCACTTATTG
ATGCACTGGAATCTACTGCCGGTGCAACTAATAATGTAATTTATGAGCAGGCTGTCATGAAAATCCGGGAAGATGTAGCA
ACCGGTCAGCAGCTTCAGTTTGCTATGCGTGCCTCTAACCGTTTTCCGCCTATGGCAGTACAGATGGTTGCCATTGGAGA
AGAATCGGGTGCCCTTGATGCCATGTTAGATAAAGTCGCGACACATTTTGAAAATGAAGTTGACAATGCCGTTGACGGTC
TGACTTCCATGATGGAACCCCTGATTATGGCAATTCTGGGTGTATTAGTGGGTGGCCTTGTGATCGCCATGTATCTGCCA
ATTTTCCAGATGGGTTCAGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BT18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.931

100

0.909
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

46.366

97.794

0.453
  pilG Neisseria meningitidis 44/76-A

46.115

97.794

0.451
  pilC Vibrio cholerae strain A1552

44.118

100

0.441
  pilC Vibrio campbellii strain DS40M4

42.327

99.02

0.419
  pilC Thermus thermophilus HB27

37.406

98.284

0.368

Multiple sequence alignment