Detailed information NTG0298560

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DOM24_RS01185
• Genome accession: NZ_CP030031
• Coordinates: 259574..260434 (-)
• Length: 286 a.a.
• NCBI ID: WP_111280219.1
• Uniprot ID: -
• Organism: Acinetobacter radioresistens strain LH6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 254574..265434

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DOM24_RS14600	-	256617..256754 (+)	138	WP_005405738.1	hypothetical protein	-
DOM24_RS01165 (DOM24_01165)	-	256822..257145 (+)	324	WP_005016998.1	pyrimidine/purine nucleoside phosphorylase	-
DOM24_RS01170 (DOM24_01170)	rlmB	257249..258004 (+)	756	WP_111280217.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
DOM24_RS01175 (DOM24_01175)	-	258029..258964 (+)	936	WP_101235097.1	DMT family transporter	-
DOM24_RS01180 (DOM24_01180)	coaE	258961..259572 (-)	612	WP_005016991.1	dephospho-CoA kinase	-
DOM24_RS01185 (DOM24_01185)	pilD	259574..260434 (-)	861	WP_111280219.1	A24 family peptidase	Machinery gene
DOM24_RS01190 (DOM24_01190)	pilC	260434..261660 (-)	1227	WP_005016988.1	type II secretion system F family protein	Machinery gene
DOM24_RS01195 (DOM24_01195)	pilB	261690..263399 (-)	1710	WP_005406017.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DOM24_RS01200 (DOM24_01200)	tpiA	263688..264482 (+)	795	WP_005023075.1	triose-phosphate isomerase	-
DOM24_RS01205 (DOM24_01205)	secG	264493..264822 (+)	330	WP_046206287.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31970.32 Da
• Isoelectric Point: 7.4686

>NTDB_id=298560 DOM24_RS01185 WP_111280219.1 259574..260434(-) (pilD) [Acinetobacter radioresistens strain LH6]
MQELITLLSNNPTALYIVVGLFSLCIGSFLNVVILRTPKMMEQEWRNECQLLLHPDQPLIDETKLTLSYPVSTCPNCHTP
IRWYQNLPLVSWLLLRGKCGQCQNPISIRYPLVELLTALCSLIVVAVYGPTLQMLFGLLLTWALITLTFIDFDTQLLPDR
YTLPLAALGLALNNYALYTSASSAIWGYVIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIVLLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=298560 DOM24_RS01185 WP_111280219.1 259574..260434(-) (pilD) [Acinetobacter radioresistens strain LH6]
ATGCAAGAATTAATTACCTTATTAAGTAATAACCCGACTGCGCTCTACATTGTGGTTGGGCTTTTCAGTCTATGTATTGG
CAGTTTTTTAAATGTCGTTATTCTTCGCACTCCTAAAATGATGGAGCAGGAATGGCGCAATGAATGTCAGTTGTTGCTTC
ATCCAGATCAGCCCCTAATTGATGAAACAAAACTTACGCTCAGCTATCCGGTTTCTACCTGTCCCAACTGTCATACGCCG
ATTCGCTGGTATCAGAATCTGCCTTTGGTCAGCTGGCTGCTACTCAGAGGCAAATGTGGTCAATGCCAGAATCCGATCAG
TATCCGTTACCCTCTAGTTGAACTTTTAACTGCTCTGTGTTCACTTATTGTAGTAGCTGTCTATGGCCCTACCCTGCAAA
TGCTATTTGGTCTGTTACTGACTTGGGCATTAATTACCCTGACCTTCATCGATTTTGATACTCAACTGCTTCCAGACCGG
TATACCTTGCCGCTTGCCGCCTTAGGCTTAGCTCTAAACAATTATGCATTATATACCTCGGCAAGCTCTGCTATTTGGGG
TTATGTGATTGGGTTTTTATGCTTATGGATTGTGTATTACCTGTTTAAAGTCATCACCGGCAAAGAAGGCATGGGATACG
GGGACTTTAAGTTACTGGCCGCACTCGGAGCCTGGATGGGTCCTTTAATGCTGCCTTTAATTGTGCTACTTTCATCTTTA
GTCGGGGCAATTATTGGTATCGTACTGCTCAAGATTCGCAAGGAAAACCAGCCTTTCGCCTTTGGTCCCTATATTGCGAT
TGCTGGCTGGATCGCTTTTTTATGGGGTGAGCAAATTATGAAAATTTATCTGGGAGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	79.371	100	0.794
pilD	Acinetobacter baumannii D1279779	78.322	100	0.783
pilD	Vibrio cholerae strain A1552	53.875	94.755	0.51
pilD	Vibrio campbellii strain DS40M4	51.087	96.503	0.493
pilD	Neisseria gonorrhoeae MS11	47.312	97.552	0.462