Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SPJ_RS09150 Genome accession   NC_012466
Coordinates   1744925..1745305 (-) Length   126 a.a.
NCBI ID   WP_033621334.1    Uniprot ID   -
Organism   Streptococcus pneumoniae JJA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1739925..1750305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ_RS09120 (SPJ_1836) - 1740185..1740718 (+) 534 WP_000775321.1 DUF402 domain-containing protein -
  SPJ_RS12580 (SPJ_1837) - 1741076..1741282 (-) 207 WP_000775827.1 transcriptional regulator -
  SPJ_RS12195 - 1741442..1742748 (+) 1307 Protein_1722 transposase -
  SPJ_RS09140 (SPJ_1840) groL 1742847..1744469 (-) 1623 WP_000031573.1 chaperonin GroEL -
  SPJ_RS09145 (SPJ_1841) groES 1744485..1744769 (-) 285 WP_000917299.1 co-chaperone GroES -
  SPJ_RS09150 (SPJ_1842) ssbB/cilA 1744925..1745305 (-) 381 WP_033621334.1 single-stranded DNA-binding protein Machinery gene
  SPJ_RS09155 (SPJ_1843) - 1745329..1745571 (-) 243 WP_000698517.1 hypothetical protein -
  SPJ_RS09160 (SPJ_1844) lytA 1745803..1746759 (-) 957 WP_000350534.1 N-acetylmuramoyl-L-alanine amidase LytA -
  SPJ_RS09165 (SPJ_1845) - 1746765..1747094 (-) 330 WP_001186214.1 phage holin -
  SPJ_RS09170 (SPJ_1846) - 1747098..1747397 (-) 300 WP_001810279.1 hypothetical protein -
  SPJ_RS09175 (SPJ_1847) - 1747407..1747757 (-) 351 WP_000852252.1 hypothetical protein -
  SPJ_RS09180 (SPJ_1848) - 1747760..1747963 (-) 204 WP_001019662.1 hypothetical protein -
  SPJ_RS12870 (SPJ_1849) - 1747944..1748060 (-) 117 WP_001063633.1 hypothetical protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14318.16 Da        Isoelectric Point: 5.2813

>NTDB_id=29808 SPJ_RS09150 WP_033621334.1 1744925..1745305(-) (ssbB/cilA) [Streptococcus pneumoniae JJA]
MLIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREVDFVNMVLWGRLAETLASYATKGSLISVDGELRTRRFEKN
GQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 381 bp        

>NTDB_id=29808 SPJ_RS09150 WP_033621334.1 1744925..1745305(-) (ssbB/cilA) [Streptococcus pneumoniae JJA]
ATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGCGCGAGCAACTATCGC
TGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGTTGATTTTGTCAATATGGTCCTATGGGGCAGACTAGCAG
AAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGTCGCTTTGAGAAAAAT
GGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCAACGTGCTATGCGTGA
AAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

98.413

100

0.984
  ssbB/cilA Streptococcus pneumoniae Rx1

97.619

100

0.976
  ssbB/cilA Streptococcus pneumoniae D39

97.619

100

0.976
  ssbB/cilA Streptococcus pneumoniae R6

97.619

100

0.976
  ssbB/cilA Streptococcus mitis SK321

97.619

100

0.976
  ssbB/cilA Streptococcus mitis NCTC 12261

96.032

100

0.96
  ssbA Streptococcus mutans UA159

73.016

100

0.73
  ssbB Streptococcus sobrinus strain NIDR 6715-7

68.254

100

0.683
  ssbB Lactococcus lactis subsp. cremoris KW2

60.55

86.508

0.524
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.495

80.159

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

46.296

85.714

0.397