Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACL_RS00950 Genome accession   NC_010163
Coordinates   186077..186523 (+) Length   148 a.a.
NCBI ID   WP_012242151.1    Uniprot ID   A0A553IJK0
Organism   Acholeplasma laidlawii PG-8A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 181077..191523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL_RS00920 (ACL_0188) tuf 181291..182478 (+) 1188 WP_012242145.1 elongation factor Tu -
  ACL_RS00925 (ACL_0189) - 182630..183388 (+) 759 WP_012242146.1 TatD family hydrolase -
  ACL_RS00930 (ACL_0190) - 183385..184140 (+) 756 WP_012242147.1 S1 family peptidase -
  ACL_RS00935 (ACL_0191) - 184145..185233 (+) 1089 WP_012242148.1 S1C family serine protease -
  ACL_RS07135 (ACL_0192) - 185230..185679 (+) 450 WP_012242149.1 CinA family protein -
  ACL_RS00945 (ACL_0193) rpsF 185787..186074 (+) 288 WP_012242150.1 30S ribosomal protein S6 -
  ACL_RS00950 (ACL_0194) ssbA 186077..186523 (+) 447 WP_012242151.1 single-stranded DNA-binding protein Machinery gene
  ACL_RS00955 (ACL_0195) rpsR 186539..186781 (+) 243 WP_012242152.1 30S ribosomal protein S18 -
  ACL_RS00960 (ACL_0196) rplI 186927..189383 (+) 2457 WP_012242153.1 50S ribosomal protein L9 -
  ACL_RS00965 (ACL_0197) dnaB 189386..190720 (+) 1335 WP_012242154.1 replicative DNA helicase -
  ACL_RS00970 (ACL_0198) - 190781..191215 (-) 435 WP_012242155.1 Dps family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16630.25 Da        Isoelectric Point: 4.6419

>NTDB_id=29714 ACL_RS00950 WP_012242151.1 186077..186523(+) (ssbA) [Acholeplasma laidlawii PG-8A]
MINRVVLVGRITKDVDHRVTTSGASVVSFTLAVNRNFTSASGEREADFINCVTWRASADFMKNYVKKGNLLAVDGRMQTR
NYEDNDGRTVYITEVVADSVQLLESRSSNQSDNSGQYRNKYEANQSNDAQDELYESTKNLIADDDLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=29714 ACL_RS00950 WP_012242151.1 186077..186523(+) (ssbA) [Acholeplasma laidlawii PG-8A]
ATGATTAATCGTGTCGTATTAGTTGGCCGTATAACAAAAGATGTAGACCATAGAGTGACCACCTCAGGTGCAAGCGTTGT
GAGTTTTACATTAGCTGTGAATCGTAATTTCACTTCTGCAAGTGGTGAAAGAGAAGCAGACTTCATTAACTGTGTTACAT
GGAGAGCATCTGCAGATTTCATGAAAAATTATGTTAAAAAGGGTAACTTACTAGCTGTTGATGGTCGCATGCAAACAAGA
AATTATGAAGATAATGATGGCCGCACAGTATACATTACAGAAGTTGTAGCAGACAGCGTACAACTATTAGAGTCTAGAAG
TTCTAATCAATCTGATAACTCTGGACAATATAGAAATAAATATGAGGCAAATCAATCAAATGATGCTCAAGATGAATTGT
ATGAAAGTACAAAAAACTTGATTGCTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A553IJK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.837

100

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

48.824

100

0.561
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.216

100

0.412
  ssbA Streptococcus mutans UA159

39.865

100

0.399
  ssbB/cilA Streptococcus pneumoniae TIGR4

38.514

100

0.385
  ssbB/cilA Streptococcus mitis NCTC 12261

37.838

100

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

37.838

100

0.378
  ssbB/cilA Streptococcus pneumoniae D39

37.838

100

0.378
  ssbB/cilA Streptococcus pneumoniae R6

37.838

100

0.378
  ssbB/cilA Streptococcus mitis SK321

37.838

100

0.378
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.45

75

0.378

Multiple sequence alignment