Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C9I47_RS04375 Genome accession   NZ_CP029843
Coordinates   975657..976916 (-) Length   419 a.a.
NCBI ID   WP_111265666.1    Uniprot ID   -
Organism   Marilutibacter maris strain HZ9B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 970657..981916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I47_RS04360 (C9I47_0775) - 972914..973864 (+) 951 WP_111265663.1 Nudix family hydrolase -
  C9I47_RS04365 (C9I47_0776) coaE 974085..974696 (-) 612 WP_111265664.1 dephospho-CoA kinase -
  C9I47_RS04370 (C9I47_0777) pilD 974790..975653 (-) 864 WP_111265665.1 A24 family peptidase Machinery gene
  C9I47_RS04375 (C9I47_0778) pilC 975657..976916 (-) 1260 WP_111265666.1 type II secretion system F family protein Machinery gene
  C9I47_RS04380 (C9I47_0779) pilB 977225..978943 (-) 1719 WP_111265667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C9I47_RS04385 (C9I47_0780) - 979078..979935 (+) 858 WP_407067497.1 glycosyltransferase family 2 protein -
  C9I47_RS04390 (C9I47_0781) - 979928..980557 (+) 630 WP_223250274.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -
  C9I47_RS04395 - 980554..981495 (+) 942 WP_111265669.1 lysylphosphatidylglycerol synthase domain-containing protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45478.96 Da        Isoelectric Point: 9.9661

>NTDB_id=296273 C9I47_RS04375 WP_111265666.1 975657..976916(-) (pilC) [Marilutibacter maris strain HZ9B]
MSATRTAAKPQPAVRRANPMEMFVWEGTDKRGKVMKGEQPAKSANMLRAELRRQGITPRVVKARGKPLFAGAGSKPITPR
DIAIMSRQLATMMKSGVPIVTALEIIAGGQKNPKMKTLVNTIRADLESGLSLYEALCKHPVQFDELYRNLVRAGEAAGVL
ETVLDTIASYKENIESLKGKIKKALYYPATVIAVAILVSAILLVFVVPQFEKTFASFGAELPAFTLMILAASDFMIAYWW
AVLLMVVGSGVAFVMAKKRIPAFAHFLDRMSLKLPIVGQILHNSAIARFARTLAVTFQAGVPLVEALDTVAGATGNVVYE
KAVLSIRDDVAVGYQVNMAMKQTNLFPHMVIQMAAIGEEAGALDTMLYKVAEFYEEEVNNAVDALSSLLEPLIMIILGVI
VGSMVVGMYLPIFKLAATI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=296273 C9I47_RS04375 WP_111265666.1 975657..976916(-) (pilC) [Marilutibacter maris strain HZ9B]
ATGTCCGCTACCCGTACCGCAGCCAAGCCGCAACCCGCCGTCCGCCGGGCCAACCCGATGGAGATGTTCGTCTGGGAGGG
CACCGACAAGCGCGGCAAGGTCATGAAGGGCGAGCAGCCCGCCAAGAGCGCGAACATGCTGCGCGCCGAACTGCGCCGCC
AGGGCATCACTCCGAGGGTGGTCAAGGCCAGGGGCAAGCCGCTGTTCGCCGGTGCCGGCTCCAAACCGATCACCCCGCGC
GACATCGCCATCATGAGCCGCCAGCTGGCGACGATGATGAAGTCCGGCGTGCCGATCGTGACAGCACTTGAGATCATTGC
CGGCGGCCAGAAGAATCCCAAGATGAAGACCCTGGTCAATACGATCAGGGCCGACCTGGAAAGCGGCCTGTCGCTGTACG
AGGCGTTGTGCAAGCACCCGGTACAGTTCGACGAGCTGTATCGCAACCTGGTCCGCGCCGGCGAGGCCGCCGGCGTGCTG
GAGACGGTGCTCGACACCATCGCCAGCTACAAGGAAAACATCGAGAGCCTGAAGGGCAAGATCAAGAAGGCGCTGTACTA
CCCAGCCACGGTCATCGCGGTGGCGATCCTGGTCAGCGCGATCCTGCTGGTGTTCGTGGTGCCGCAGTTCGAGAAGACCT
TCGCCAGCTTTGGCGCCGAGCTGCCGGCCTTCACCCTGATGATCCTCGCCGCCAGCGACTTCATGATCGCCTACTGGTGG
GCTGTCCTGCTGATGGTGGTCGGCAGTGGCGTGGCCTTCGTGATGGCCAAGAAGCGGATTCCGGCCTTCGCGCACTTCCT
CGACCGGATGTCGCTGAAGCTGCCGATCGTCGGCCAGATCCTGCACAACTCGGCGATCGCCCGCTTCGCCCGCACCCTGG
CGGTGACCTTCCAGGCCGGCGTGCCGCTGGTCGAGGCATTGGACACCGTTGCCGGCGCGACCGGCAACGTGGTCTACGAG
AAGGCCGTGCTCAGCATCCGCGACGATGTCGCGGTCGGCTACCAGGTCAACATGGCGATGAAACAGACCAACCTGTTCCC
GCACATGGTGATCCAGATGGCGGCGATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGTACAAGGTCGCCGAGTTCT
ACGAGGAAGAGGTCAACAACGCGGTCGACGCGCTGTCGAGCCTGCTCGAACCGCTGATCATGATCATCCTCGGCGTGATC
GTCGGCAGCATGGTCGTGGGCATGTACCTGCCGATTTTCAAACTGGCGGCGACGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(86-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.665

96.897

0.539
  pilC Acinetobacter baumannii D1279779

52.334

97.136

0.508
  pilC Acinetobacter baylyi ADP1

51.471

97.375

0.501
  pilC Pseudomonas stutzeri DSM 10701

51.111

96.659

0.494
  pilG Neisseria gonorrhoeae MS11

43.216

94.988

0.411
  pilG Neisseria meningitidis 44/76-A

43.216

94.988

0.411
  pilC Vibrio cholerae strain A1552

40.494

96.659

0.391
  pilC Thermus thermophilus HB27

39.756

97.852

0.389
  pilC Vibrio campbellii strain DS40M4

39.454

96.181

0.379

Multiple sequence alignment