Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   C9I47_RS04370 Genome accession   NZ_CP029843
Coordinates   974790..975653 (-) Length   287 a.a.
NCBI ID   WP_111265665.1    Uniprot ID   A0A2U9T7L7
Organism   Marilutibacter maris strain HZ9B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 969790..980653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I47_RS04355 (C9I47_0774) secA 970055..972796 (+) 2742 WP_111265662.1 preprotein translocase subunit SecA -
  C9I47_RS04360 (C9I47_0775) - 972914..973864 (+) 951 WP_111265663.1 Nudix family hydrolase -
  C9I47_RS04365 (C9I47_0776) coaE 974085..974696 (-) 612 WP_111265664.1 dephospho-CoA kinase -
  C9I47_RS04370 (C9I47_0777) pilD 974790..975653 (-) 864 WP_111265665.1 A24 family peptidase Machinery gene
  C9I47_RS04375 (C9I47_0778) pilC 975657..976916 (-) 1260 WP_111265666.1 type II secretion system F family protein Machinery gene
  C9I47_RS04380 (C9I47_0779) pilB 977225..978943 (-) 1719 WP_111265667.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C9I47_RS04385 (C9I47_0780) - 979078..979935 (+) 858 WP_407067497.1 glycosyltransferase family 2 protein -
  C9I47_RS04390 (C9I47_0781) - 979928..980557 (+) 630 WP_223250274.1 bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31818.48 Da        Isoelectric Point: 7.6834

>NTDB_id=296272 C9I47_RS04370 WP_111265665.1 974790..975653(-) (pilD) [Marilutibacter maris strain HZ9B]
MAYLDQNPAIGYPLVAGLGLLVGSFLNVVILRLPKRLEWEWRRDAHEILEDTDNYDPPPPGIVVERSHCPHCKHQLSWYE
NIPVFSWLALRGRCRSCKTPISVQYPLVELLTMLLVLVSVWQFGFGWQGFGAALFSCFLIAGSGIDFRTQLLPDQLTLPL
MWLGLIASADNLYFPVKPALLGAVAGYLSLWSVWWVFKQLTGKEGMGHGDFKLLAAIGAWVGLKGVLPTIMLSSLVGAII
GSIWLAVKGRDKATPIPFGPYLAIAGWIVFFWGDRLISAYLEYSGLG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=296272 C9I47_RS04370 WP_111265665.1 974790..975653(-) (pilD) [Marilutibacter maris strain HZ9B]
ATGGCGTATCTGGACCAGAACCCGGCCATCGGCTATCCGCTGGTGGCCGGCCTCGGGCTGCTGGTCGGCAGCTTCCTGAA
CGTGGTGATCCTGCGCCTGCCCAAGCGGCTGGAGTGGGAGTGGCGGCGGGACGCCCATGAGATTCTCGAGGACACCGACA
ACTACGACCCGCCTCCTCCGGGGATCGTGGTCGAGCGTTCGCACTGCCCGCACTGCAAGCACCAGCTGAGCTGGTACGAG
AACATCCCGGTGTTCAGCTGGCTGGCCCTGCGCGGGCGCTGCCGCAGCTGCAAGACGCCGATCTCGGTCCAGTACCCGCT
GGTGGAGCTGCTGACCATGCTGCTGGTGCTGGTCAGCGTCTGGCAGTTCGGCTTCGGCTGGCAGGGCTTCGGCGCGGCGT
TGTTCTCCTGCTTCCTGATCGCCGGCTCGGGCATCGACTTCCGCACCCAGTTGCTGCCCGACCAACTGACCCTGCCGCTG
ATGTGGCTGGGACTGATCGCCAGCGCCGACAACCTGTACTTTCCGGTCAAACCGGCCCTGCTCGGCGCCGTCGCCGGCTA
TCTGAGCCTGTGGTCGGTCTGGTGGGTGTTCAAGCAACTGACCGGCAAGGAAGGCATGGGACACGGCGATTTCAAGCTGC
TCGCCGCGATCGGCGCCTGGGTCGGCCTGAAGGGCGTGCTGCCGACGATCATGCTGTCTTCTCTGGTCGGCGCGATCATC
GGCTCGATCTGGCTTGCCGTGAAGGGCCGCGACAAGGCCACGCCGATCCCGTTCGGCCCCTACCTCGCGATTGCGGGCTG
GATCGTGTTCTTCTGGGGCGACCGCCTGATCTCCGCCTACCTCGAATACTCCGGGCTGGGTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(134-241)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9T7L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.518

96.864

0.509
  pilD Acinetobacter baumannii D1279779

48.611

100

0.488
  pilD Acinetobacter nosocomialis M2

47.569

100

0.477
  pilD Vibrio campbellii strain DS40M4

49.438

93.031

0.46
  pilD Neisseria gonorrhoeae MS11

46.043

96.864

0.446

Multiple sequence alignment