Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | CSC58_RS04465 | Genome accession | NZ_CP029681 |
| Coordinates | 793230..793541 (+) | Length | 103 a.a. |
| NCBI ID | WP_000472256.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain AR_0473 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 788230..798541
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC58_RS04435 (CSC58_0816) | - | 789013..789216 (+) | 204 | WP_000087561.1 | YqgQ family protein | - |
| CSC58_RS04440 (CSC58_0817) | - | 789213..790199 (+) | 987 | WP_000161314.1 | ROK family glucokinase | - |
| CSC58_RS04445 (CSC58_0818) | - | 790199..790528 (+) | 330 | WP_001018871.1 | MTH1187 family thiamine-binding protein | - |
| CSC58_RS04450 (CSC58_0819) | - | 790525..791148 (+) | 624 | WP_001223008.1 | MBL fold metallo-hydrolase | - |
| CSC58_RS04455 (CSC58_0820) | comGA | 791200..792174 (+) | 975 | WP_000697220.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CSC58_RS04460 (CSC58_0821) | comGB | 792146..793216 (+) | 1071 | WP_000776401.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| CSC58_RS04465 (CSC58_0822) | comGC | 793230..793541 (+) | 312 | WP_000472256.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CSC58_RS04470 (CSC58_0823) | comGD | 793519..793965 (+) | 447 | WP_001788899.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CSC58_RS04475 (CSC58_0824) | comGE | 793952..794251 (+) | 300 | WP_000844410.1 | hypothetical protein | Machinery gene |
| CSC58_RS04480 (CSC58_0825) | comGF | 794169..794666 (+) | 498 | WP_020978197.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| CSC58_RS04485 | - | 794763..794909 (+) | 147 | WP_001789879.1 | hypothetical protein | - |
| CSC58_RS04490 (CSC58_0826) | - | 794899..795423 (+) | 525 | WP_001015121.1 | shikimate kinase | - |
| CSC58_RS04495 (CSC58_0827) | gcvT | 795582..796673 (+) | 1092 | WP_000093349.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| CSC58_RS04500 (CSC58_0828) | gcvPA | 796693..798039 (+) | 1347 | WP_000019681.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11315.36 Da Isoelectric Point: 8.5268
>NTDB_id=295183 CSC58_RS04465 WP_000472256.1 793230..793541(+) (comGC) [Staphylococcus aureus strain AR_0473]
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN
Nucleotide
Download Length: 312 bp
>NTDB_id=295183 CSC58_RS04465 WP_000472256.1 793230..793541(+) (comGC) [Staphylococcus aureus strain AR_0473]
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
100 |
100 |
1 |
| comGC | Staphylococcus aureus N315 |
100 |
100 |
1 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae D39 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus pneumoniae R6 |
46.078 |
99.029 |
0.456 |
| comGC/cglC | Streptococcus mitis SK321 |
51.163 |
83.495 |
0.427 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.163 |
83.495 |
0.427 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
42.857 |
95.146 |
0.408 |
| comYC | Streptococcus suis isolate S10 |
50 |
75.728 |
0.379 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
88.35 |
0.369 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
46.341 |
79.612 |
0.369 |