Detailed information    

insolico Bioinformatically predicted

Overview


Name   treR   Type   Regulator
Locus tag   EQH43_RS08615 Genome accession   NZ_CP035237
Coordinates   1712005..1712715 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain TVO_Taiwan19F-14     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1707005..1717715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH43_RS08600 (EQH43_09035) - 1707546..1707794 (-) 249 WP_000364990.1 YneF family protein -
  EQH43_RS08605 (EQH43_09040) treC 1708050..1709675 (-) 1626 WP_000171220.1 alpha,alpha-phosphotrehalase -
  EQH43_RS08610 (EQH43_09050) treP 1709853..1711820 (-) 1968 WP_000514329.1 PTS system trehalose-specific EIIBC component -
  EQH43_RS08615 (EQH43_09055) treR 1712005..1712715 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  EQH43_RS08620 (EQH43_09060) - 1712872..1714015 (+) 1144 Protein_1725 transposase -
  EQH43_RS08625 (EQH43_09070) - 1714182..1715528 (+) 1347 WP_041179004.1 IS1380-like element ISSpn5 family transposase -
  EQH43_RS08630 (EQH43_09075) - 1715721..1715906 (+) 186 Protein_1727 transposase -
  EQH43_RS08635 (EQH43_09080) - 1715981..1716907 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -

Sequence


Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=295186 EQH43_RS08615 WP_000760673.1 1712005..1712715(+) (treR) [Streptococcus pneumoniae strain TVO_Taiwan19F-14]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=295186 EQH43_RS08615 WP_000760673.1 1712005..1712715(+) (treR) [Streptococcus pneumoniae strain TVO_Taiwan19F-14]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593


Multiple sequence alignment