Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CSB72_RS05000 Genome accession   NZ_CP029678
Coordinates   928404..928832 (+) Length   142 a.a.
NCBI ID   WP_000934783.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR_0216     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 923404..933832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB72_RS04945 (CSB72_0879) - 923614..923799 (-) 186 WP_024936996.1 hypothetical protein -
  CSB72_RS15735 (CSB72_0880) - 923796..923942 (-) 147 WP_001049401.1 hypothetical protein -
  CSB72_RS04950 (CSB72_0881) - 923954..924664 (-) 711 WP_000094091.1 XRE family transcriptional regulator -
  CSB72_RS04955 (CSB72_0882) - 924835..925074 (+) 240 WP_000548576.1 helix-turn-helix transcriptional regulator -
  CSB72_RS04960 (CSB72_0883) - 925087..925530 (+) 444 WP_000435355.1 hypothetical protein -
  CSB72_RS04965 (CSB72_0884) - 925545..925688 (+) 144 WP_000939498.1 hypothetical protein -
  CSB72_RS04970 (CSB72_0885) - 925678..925887 (-) 210 WP_000642492.1 hypothetical protein -
  CSB72_RS04975 (CSB72_0886) - 925944..926657 (+) 714 WP_031807112.1 BRO family protein -
  CSB72_RS04980 - 926759..926920 (+) 162 WP_000066019.1 DUF1270 family protein -
  CSB72_RS04985 (CSB72_0887) - 927012..927272 (+) 261 WP_031890781.1 DUF1108 family protein -
  CSB72_RS04990 (CSB72_0888) - 927287..927766 (+) 480 WP_000002517.1 siphovirus Gp157 family protein -
  CSB72_RS04995 (CSB72_0889) - 927766..928404 (+) 639 WP_001043063.1 ERF family protein -
  CSB72_RS05000 (CSB72_0890) ssbA 928404..928832 (+) 429 WP_000934783.1 single-stranded DNA-binding protein Machinery gene
  CSB72_RS05005 (CSB72_0891) - 928846..929520 (+) 675 WP_015977703.1 putative HNHc nuclease -
  CSB72_RS05010 (CSB72_0892) - 929626..930483 (-) 858 WP_000371250.1 DUF4393 domain-containing protein -
  CSB72_RS05015 (CSB72_0893) - 930548..931303 (+) 756 WP_110179715.1 conserved phage C-terminal domain-containing protein -
  CSB72_RS05020 (CSB72_0894) - 931313..932092 (+) 780 WP_000803065.1 ATP-binding protein -
  CSB72_RS15740 (CSB72_0895) - 932086..932247 (+) 162 WP_000237153.1 hypothetical protein -
  CSB72_RS05025 (CSB72_0896) - 932260..932481 (+) 222 WP_001123673.1 DUF3269 family protein -
  CSB72_RS05030 (CSB72_0897) - 932492..932896 (+) 405 WP_000049784.1 DUF1064 domain-containing protein -
  CSB72_RS05035 (CSB72_0898) - 932901..933086 (+) 186 WP_001187236.1 DUF3113 family protein -
  CSB72_RS05040 - 933087..933449 (+) 363 Protein_899 SA1788 family PVL leukocidin-associated protein -
  CSB72_RS05045 (CSB72_0901) - 933449..933703 (+) 255 WP_000022736.1 DUF3310 domain-containing protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16047.61 Da        Isoelectric Point: 5.8724

>NTDB_id=295087 CSB72_RS05000 WP_000934783.1 928404..928832(+) (ssbA) [Staphylococcus aureus strain AR_0216]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAIIDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=295087 CSB72_RS05000 WP_000934783.1 928404..928832(+) (ssbA) [Staphylococcus aureus strain AR_0216]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTATTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.657

100

0.43
  ssbA Streptococcus mutans UA159

46.957

80.986

0.38
  ssbB/cilA Streptococcus mitis NCTC 12261

45.763

83.099

0.38
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.763

83.099

0.38
  ssbB/cilA Streptococcus pneumoniae Rx1

44.915

83.099

0.373
  ssbB/cilA Streptococcus pneumoniae D39

44.915

83.099

0.373
  ssbB/cilA Streptococcus pneumoniae R6

44.915

83.099

0.373
  ssbB/cilA Streptococcus mitis SK321

44.915

83.099

0.373

Multiple sequence alignment