Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CSB75_RS04910 Genome accession   NZ_CP029675
Coordinates   924718..925143 (+) Length   141 a.a.
NCBI ID   WP_000934774.1    Uniprot ID   Q932A8
Organism   Staphylococcus aureus strain AR_0219     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 919718..930143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB75_RS04840 (CSB75_0866) - 919739..920068 (-) 330 WP_000429766.1 helix-turn-helix transcriptional regulator -
  CSB75_RS04845 (CSB75_0867) - 920229..920420 (+) 192 WP_001115060.1 helix-turn-helix transcriptional regulator -
  CSB75_RS04850 (CSB75_0868) - 920509..920652 (+) 144 WP_000939498.1 hypothetical protein -
  CSB75_RS04855 (CSB75_0869) - 920642..920851 (-) 210 WP_000642492.1 hypothetical protein -
  CSB75_RS04860 (CSB75_0870) - 920908..921687 (+) 780 WP_001148557.1 phage antirepressor KilAC domain-containing protein -
  CSB75_RS04865 (CSB75_0871) - 921688..921912 (+) 225 WP_000187184.1 hypothetical protein -
  CSB75_RS04870 (CSB75_0872) - 921952..922095 (+) 144 WP_000939498.1 hypothetical protein -
  CSB75_RS04875 (CSB75_0873) - 922117..922764 (-) 648 WP_001838167.1 hypothetical protein -
  CSB75_RS04880 (CSB75_0874) - 922835..923056 (+) 222 WP_000977378.1 hypothetical protein -
  CSB75_RS04885 - 923049..923210 (+) 162 WP_000066007.1 DUF1270 domain-containing protein -
  CSB75_RS04890 (CSB75_0875) - 923303..923605 (+) 303 WP_000165363.1 DUF2482 family protein -
  CSB75_RS04895 (CSB75_0876) - 923610..923870 (+) 261 WP_000291068.1 DUF1108 family protein -
  CSB75_RS04900 (CSB75_0877) - 923880..924101 (+) 222 WP_000815401.1 DUF2483 family protein -
  CSB75_RS04905 (CSB75_0879) - 924094..924718 (+) 625 Protein_882 DUF1071 domain-containing protein -
  CSB75_RS04910 (CSB75_0880) ssb 924718..925143 (+) 426 WP_000934774.1 single-stranded DNA-binding protein Machinery gene
  CSB75_RS04915 (CSB75_0881) - 925154..925705 (+) 552 WP_001004505.1 NUMOD4 domain-containing protein -
  CSB75_RS04920 (CSB75_0882) - 925706..926380 (+) 675 WP_001121803.1 putative HNHc nuclease -
  CSB75_RS04925 (CSB75_0883) - 926520..926801 (-) 282 WP_000414755.1 hypothetical protein -
  CSB75_RS04935 (CSB75_0884) - 926866..927597 (+) 732 WP_000132051.1 helix-turn-helix domain-containing protein -
  CSB75_RS04940 (CSB75_0885) - 927610..928395 (+) 786 WP_000443353.1 ATP-binding protein -
  CSB75_RS04945 (CSB75_0886) - 928392..928550 (+) 159 WP_000628836.1 hypothetical protein -
  CSB75_RS04950 (CSB75_0887) - 928563..928784 (+) 222 WP_001123695.1 DUF3269 family protein -
  CSB75_RS04955 (CSB75_0888) - 928794..929198 (+) 405 WP_000049784.1 DUF1064 domain-containing protein -
  CSB75_RS04960 (CSB75_0889) - 929203..929388 (+) 186 WP_001187242.1 DUF3113 family protein -
  CSB75_RS04965 (CSB75_0890) - 929389..929760 (+) 372 WP_001140289.1 SA1788 family PVL leukocidin-associated protein -
  CSB75_RS04970 (CSB75_0891) - 929761..930009 (+) 249 WP_001126846.1 phi PVL orf 51-like protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15909.51 Da        Isoelectric Point: 6.3751

>NTDB_id=295042 CSB75_RS04910 WP_000934774.1 924718..925143(+) (ssb) [Staphylococcus aureus strain AR_0219]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
NYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYQQQRQTQTGNNPFDNNADSIEDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=295042 CSB75_RS04910 WP_000934774.1 924718..925143(+) (ssb) [Staphylococcus aureus strain AR_0219]
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGTGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGT
AACTATGAAAACAAAGACGGGCAACGTGTATTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.631
  ssbA Bacillus subtilis subsp. subtilis str. 168

82.243

75.887

0.624
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.262

100

0.433
  ssbA Streptococcus mutans UA159

42.553

100

0.426
  ssbB/cilA Streptococcus mitis NCTC 12261

45.763

83.688

0.383
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.763

83.688

0.383
  ssbB/cilA Streptococcus pneumoniae Rx1

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae D39

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae R6

44.915

83.688

0.376
  ssbB/cilA Streptococcus mitis SK321

44.915

83.688

0.376

Multiple sequence alignment