Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DACI_RS27775 Genome accession   NC_010002
Coordinates   6093959..6095176 (+) Length   405 a.a.
NCBI ID   WP_012207287.1    Uniprot ID   A0A210W3K3
Organism   Delftia acidovorans SPH-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6088959..6100176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DACI_RS27750 (Daci_5485) rpmA 6090193..6090450 (-) 258 WP_012207283.1 50S ribosomal protein L27 -
  DACI_RS27755 (Daci_5486) rplU 6090466..6090777 (-) 312 WP_012207284.1 50S ribosomal protein L21 -
  DACI_RS27760 (Daci_5487) - 6091008..6091937 (+) 930 WP_034396917.1 polyprenyl synthetase family protein -
  DACI_RS27770 (Daci_5488) pilB 6092178..6093920 (+) 1743 WP_012207286.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DACI_RS27775 (Daci_5489) pilC 6093959..6095176 (+) 1218 WP_012207287.1 type II secretion system F family protein Machinery gene
  DACI_RS27780 (Daci_5490) pilD 6095176..6096060 (+) 885 WP_012207288.1 A24 family peptidase Machinery gene
  DACI_RS27785 (Daci_5491) coaE 6096075..6096719 (+) 645 WP_012207289.1 dephospho-CoA kinase -
  DACI_RS27790 (Daci_5492) zapD 6096809..6097564 (+) 756 WP_012207290.1 cell division protein ZapD -
  DACI_RS27795 (Daci_5493) - 6097582..6097818 (+) 237 WP_085930583.1 DNA gyrase inhibitor YacG -
  DACI_RS27800 (Daci_5494) - 6097829..6098347 (-) 519 WP_012207292.1 (deoxy)nucleoside triphosphate pyrophosphohydrolase -
  DACI_RS27805 (Daci_5495) - 6098398..6099354 (-) 957 WP_012207293.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44386.17 Da        Isoelectric Point: 9.3857

>NTDB_id=29502 DACI_RS27775 WP_012207287.1 6093959..6095176(+) (pilC) [Delftia acidovorans SPH-1]
MATAASKGIKEFVFEWEGKDRNGKIVRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTRLLADIRSDVETGTSLNAAYRKHPLYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVVVVAFIVVTIIMLFVIPAFKDVFSSFGADLPAPTLFVMGVSDIFVQWWWVIFGVIGGGFYFFM
QAWKRNERMQQFMDRAMLKMPVFGALIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAIYANATEKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=29502 DACI_RS27775 WP_012207287.1 6093959..6095176(+) (pilC) [Delftia acidovorans SPH-1]
ATGGCCACAGCCGCGTCCAAAGGAATCAAGGAATTTGTCTTTGAATGGGAGGGCAAGGATCGCAACGGCAAGATCGTCCG
CGGCGAAACCCGGGCCGGGGGCATCAATCAGGTCCAGGCCATGCTGCGCCGTCAGGGCGTGCTTCCCAGCAAGATCAAGA
AGCGCCGTACGCGCGGCGGCAAGAAGATCAAGCCCAAGGACATCGCGCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCCGGCGTCCCTCTGCTGCAGGCCTTCGACATCGTCGGGCGCGGCAACACCAACCCCAGTGTGACGCGCCTGCTGGCCGA
TATCCGCTCCGACGTGGAGACCGGCACCTCACTGAATGCGGCCTATCGCAAGCACCCCCTTTACTTCGACAGCCTCTACT
GCAATCTGGTGGAGGCAGGCGAAGCTGCCGGTATCCTGGAAGCCCTGCTGGACCGCCTGGCCACCTACATGGAGAAGACC
GAAGCCATCAAGTCCAAGATCAAGTCGGCGTTGATGTATCCGATTTCGGTGGTCGTTGTGGCCTTCATCGTCGTGACCAT
CATCATGCTTTTCGTGATCCCGGCCTTCAAGGACGTGTTCAGCTCGTTCGGTGCGGATCTGCCGGCCCCGACTCTGTTCG
TGATGGGTGTCAGCGACATCTTTGTCCAATGGTGGTGGGTAATCTTCGGCGTGATCGGAGGCGGCTTCTACTTCTTCATG
CAGGCCTGGAAGCGCAATGAGCGCATGCAGCAGTTCATGGATCGTGCAATGTTGAAGATGCCGGTCTTTGGCGCATTGAT
CGAAAAGTCCTGCGTTGCACGCTGGACGCGCACGCTGTCGACCATGTTTGCTGCAGGCGTTCCGCTGGTCGAAGCACTGG
ATTCCGTCGGCGGCGCCTCCGGGAATGCCATCTACGCCAATGCCACCGAGAAGATCCAGCAGGAAGTCTCCACCGGCACC
AGCCTCACGGTGGCCATGACCAATGCCAACGTCTTTCCCTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCCGG
CTCCATCGACCACATGCTTGGCAAAGCAGCCGATTTCTACGAGGAAGAGGTCGATGACATGGTGGCAGGCCTGTCCAGCC
TGATGGAGCCTATCATCATTGTTTTCCTGGGCACCCTCATCGGCGGCATCGTGGTTTCGATGTACCTGCCCATCTTCAAG
CTGGGTCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A210W3K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.446

99.753

0.553
  pilC Legionella pneumophila strain ERS1305867

50.754

98.272

0.499
  pilG Neisseria gonorrhoeae MS11

50.25

98.765

0.496
  pilG Neisseria meningitidis 44/76-A

50

98.765

0.494
  pilC Acinetobacter baylyi ADP1

48.995

98.272

0.481
  pilC Acinetobacter baumannii D1279779

48.111

98.025

0.472
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

39

98.765

0.385
  pilC Thermus thermophilus HB27

36.725

99.506

0.365

Multiple sequence alignment