Detailed information NTG0029503

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DACI_RS27780
• Genome accession: NC_010002
• Coordinates: 6095176..6096060 (+)
• Length: 294 a.a.
• NCBI ID: WP_012207288.1
• Uniprot ID: -
• Organism: Delftia acidovorans SPH-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6090176..6101060

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DACI_RS27750 (Daci_5485)	rpmA	6090193..6090450 (-)	258	WP_012207283.1	50S ribosomal protein L27	-
DACI_RS27755 (Daci_5486)	rplU	6090466..6090777 (-)	312	WP_012207284.1	50S ribosomal protein L21	-
DACI_RS27760 (Daci_5487)	-	6091008..6091937 (+)	930	WP_034396917.1	polyprenyl synthetase family protein	-
DACI_RS27770 (Daci_5488)	pilB	6092178..6093920 (+)	1743	WP_012207286.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DACI_RS27775 (Daci_5489)	pilC	6093959..6095176 (+)	1218	WP_012207287.1	type II secretion system F family protein	Machinery gene
DACI_RS27780 (Daci_5490)	pilD	6095176..6096060 (+)	885	WP_012207288.1	A24 family peptidase	Machinery gene
DACI_RS27785 (Daci_5491)	coaE	6096075..6096719 (+)	645	WP_012207289.1	dephospho-CoA kinase	-
DACI_RS27790 (Daci_5492)	zapD	6096809..6097564 (+)	756	WP_012207290.1	cell division protein ZapD	-
DACI_RS27795 (Daci_5493)	-	6097582..6097818 (+)	237	WP_085930583.1	DNA gyrase inhibitor YacG	-
DACI_RS27800 (Daci_5494)	-	6097829..6098347 (-)	519	WP_012207292.1	(deoxy)nucleoside triphosphate pyrophosphohydrolase	-
DACI_RS27805 (Daci_5495)	-	6098398..6099354 (-)	957	WP_012207293.1	ATP-binding protein	-
DACI_RS27810 (Daci_5496)	argJ	6099520..6100752 (-)	1233	WP_012207294.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 294 a.a.
• Molecular weight: 31719.27 Da
• Isoelectric Point: 6.6134

>NTDB_id=29503 DACI_RS27780 WP_012207288.1 6095176..6096060(+) (pilD) [Delftia acidovorans SPH-1]
MVLELWMQATLGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSGATPPSAAPDPAEPPLSLSRPRSRCPHCGH
AIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCTMQWGITPTGAAWCLFSAALLSLALIDWDTTLLPD
DITLPLLWAGLLSSALHWTAVTLADAVWGAAVGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILIS
SVIGAVVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAAIGL

Nucleotide

• Length: 885 bp

>NTDB_id=29503 DACI_RS27780 WP_012207288.1 6095176..6096060(+) (pilD) [Delftia acidovorans SPH-1]
ATGGTTTTGGAACTCTGGATGCAGGCTACATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAACAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAGGAGCAATCCGGTGCCACGC
CCCCCTCTGCTGCGCCTGACCCTGCCGAGCCTCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCATTGCGGCCAT
GCCATCCACTGGTACGAGAACATTCCCGTGCTCAGCTATCTGGCGCTGCGGGGCCGGTGCTCGGAATGCAAGGCATCGAT
CAGCATCCGCTACCCGCTGGTGGAACTGGCCTGCGCTGCGCTATTCGCCTACTGCACGATGCAATGGGGCATCACGCCCA
CAGGCGCTGCCTGGTGCCTTTTCAGCGCCGCCTTGCTGAGCCTGGCATTGATCGACTGGGATACCACACTGCTCCCAGAC
GACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGACTCTGGCCGACGCGGT
CTGGGGTGCCGCAGTGGGCTATCTTTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGGAAGGCATGG
GCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATCCTGATCTCG
TCCGTGATTGGCGCCGTCGTGGGCATTGCGCTGAAGATCAACAGCCGCCTGCGCGAAGGTGGCTATGTTCCCTTTGGCCC
CTTTCTTGCGGGCGCCGGCTTTGCCGCCATGGTGTTCGGACCCCAGCAGATGCTGCAATCCCTGTTGGCAGCCATCGGTC
TTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-128)

• Type IV leader peptidase family (Peptidase_A24) (140-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.429	95.238	0.49
pilD	Vibrio campbellii strain DS40M4	46.763	94.558	0.442
pilD	Acinetobacter nosocomialis M2	44.485	92.517	0.412
pilD	Acinetobacter baumannii D1279779	44.118	92.517	0.408
pilD	Neisseria gonorrhoeae MS11	45.627	89.456	0.408