Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CSB84_RS04750 | Genome accession | NZ_CP029663 |
| Coordinates | 889558..889986 (+) | Length | 142 a.a. |
| NCBI ID | WP_000934385.1 | Uniprot ID | A0A2K0CLZ8 |
| Organism | Staphylococcus aureus strain AR_0228 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 880197..926862 | 889558..889986 | within | 0 |
Gene organization within MGE regions
Location: 880197..926862
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSB84_RS04665 (CSB84_0824) | sufB | 880197..881594 (+) | 1398 | WP_001074405.1 | Fe-S cluster assembly protein SufB | - |
| CSB84_RS04670 (CSB84_0825) | - | 881662..882711 (-) | 1050 | WP_001145726.1 | tyrosine-type recombinase/integrase | - |
| CSB84_RS04675 (CSB84_0826) | - | 882824..883003 (+) | 180 | WP_000337826.1 | hypothetical protein | - |
| CSB84_RS04680 (CSB84_0827) | - | 882983..883915 (-) | 933 | WP_000392186.1 | hypothetical protein | - |
| CSB84_RS04685 (CSB84_0828) | - | 883947..884672 (-) | 726 | WP_000661437.1 | PH domain-containing protein | - |
| CSB84_RS04690 (CSB84_0829) | - | 884700..885374 (-) | 675 | WP_000775188.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CSB84_RS04695 (CSB84_0830) | - | 885391..885723 (-) | 333 | WP_001055143.1 | helix-turn-helix transcriptional regulator | - |
| CSB84_RS04700 (CSB84_0831) | - | 885986..886180 (+) | 195 | WP_000108122.1 | helix-turn-helix transcriptional regulator | - |
| CSB84_RS04705 (CSB84_0832) | - | 886180..886947 (+) | 768 | WP_001002757.1 | phage antirepressor Ant | - |
| CSB84_RS04710 (CSB84_0833) | - | 886948..887172 (+) | 225 | WP_000187184.1 | hypothetical protein | - |
| CSB84_RS04715 (CSB84_0834) | - | 887212..887661 (+) | 450 | WP_001094943.1 | hypothetical protein | - |
| CSB84_RS04720 (CSB84_0835) | - | 887675..887896 (+) | 222 | WP_000977381.1 | hypothetical protein | - |
| CSB84_RS04725 | - | 887889..888050 (+) | 162 | WP_000066011.1 | DUF1270 domain-containing protein | - |
| CSB84_RS04730 (CSB84_0836) | - | 888144..888446 (+) | 303 | WP_000165363.1 | DUF2482 family protein | - |
| CSB84_RS04735 (CSB84_0837) | - | 888451..888711 (+) | 261 | WP_000291090.1 | DUF1108 family protein | - |
| CSB84_RS04740 (CSB84_0838) | - | 888721..888942 (+) | 222 | WP_000815401.1 | DUF2483 family protein | - |
| CSB84_RS04745 (CSB84_0839) | - | 888935..889558 (+) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| CSB84_RS04750 (CSB84_0840) | ssbA | 889558..889986 (+) | 429 | WP_000934385.1 | single-stranded DNA-binding protein | Machinery gene |
| CSB84_RS04755 (CSB84_0841) | - | 890000..890674 (+) | 675 | WP_001124438.1 | putative HNHc nuclease | - |
| CSB84_RS15390 | - | 890671..890820 (+) | 150 | WP_001081076.1 | hypothetical protein | - |
| CSB84_RS04760 (CSB84_0842) | - | 890813..891094 (-) | 282 | WP_000414755.1 | hypothetical protein | - |
| CSB84_RS04765 (CSB84_0843) | - | 891160..891930 (+) | 771 | WP_000190254.1 | conserved phage C-terminal domain-containing protein | - |
| CSB84_RS04770 (CSB84_0844) | - | 891940..892719 (+) | 780 | WP_000803062.1 | ATP-binding protein | - |
| CSB84_RS04775 (CSB84_0845) | - | 892713..892871 (+) | 159 | WP_000256589.1 | hypothetical protein | - |
| CSB84_RS04780 (CSB84_0846) | - | 892884..893105 (+) | 222 | WP_001123695.1 | DUF3269 family protein | - |
| CSB84_RS04785 (CSB84_0847) | - | 893115..893519 (+) | 405 | WP_000049794.1 | DUF1064 domain-containing protein | - |
| CSB84_RS04790 (CSB84_0848) | - | 893524..893709 (+) | 186 | WP_001187243.1 | DUF3113 family protein | - |
| CSB84_RS04795 (CSB84_0849) | - | 893710..894015 (+) | 306 | WP_000101252.1 | hypothetical protein | - |
| CSB84_RS04800 (CSB84_0850) | - | 894143..894499 (+) | 357 | WP_000029376.1 | SA1788 family PVL leukocidin-associated protein | - |
| CSB84_RS04805 (CSB84_0851) | - | 894503..894745 (+) | 243 | WP_000131376.1 | SAV1978 family virulence-associated passenger protein | - |
| CSB84_RS04810 (CSB84_0852) | - | 894754..895125 (+) | 372 | WP_001557190.1 | hypothetical protein | - |
| CSB84_RS04815 (CSB84_0853) | - | 895118..895372 (+) | 255 | WP_001065060.1 | DUF1024 family protein | - |
| CSB84_RS04820 (CSB84_0854) | - | 895359..895529 (+) | 171 | WP_000714412.1 | hypothetical protein | - |
| CSB84_RS04825 (CSB84_0855) | - | 895522..896055 (+) | 534 | WP_000185647.1 | dUTP pyrophosphatase | - |
| CSB84_RS04830 (CSB84_0856) | - | 896092..896298 (+) | 207 | WP_000617154.1 | DUF1381 domain-containing protein | - |
| CSB84_RS04835 (CSB84_0857) | - | 896295..896489 (+) | 195 | WP_000132921.1 | hypothetical protein | - |
| CSB84_RS04840 (CSB84_0858) | - | 896486..896689 (+) | 204 | WP_001072795.1 | hypothetical protein | - |
| CSB84_RS04845 (CSB84_0859) | - | 896682..896918 (+) | 237 | WP_000608278.1 | hypothetical protein | - |
| CSB84_RS04850 (CSB84_0860) | - | 896911..897084 (+) | 174 | WP_000595257.1 | transcriptional activator RinB | - |
| CSB84_RS04855 | - | 897085..897186 (+) | 102 | Protein_852 | hypothetical protein | - |
| CSB84_RS04860 (CSB84_0861) | - | 897255..897677 (+) | 423 | WP_000162701.1 | RinA family phage transcriptional activator | - |
| CSB84_RS04865 (CSB84_0862) | - | 897865..898359 (+) | 495 | WP_001038244.1 | terminase small subunit | - |
| CSB84_RS04870 (CSB84_0863) | - | 898362..899657 (+) | 1296 | WP_000273011.1 | PBSX family phage terminase large subunit | - |
| CSB84_RS04875 (CSB84_0864) | - | 899668..901198 (+) | 1531 | Protein_856 | phage portal protein | - |
| CSB84_RS04880 | - | 901260..902203 (+) | 944 | Protein_857 | minor capsid protein | - |
| CSB84_RS04885 (CSB84_0867) | - | 902276..902446 (+) | 171 | WP_000072205.1 | hypothetical protein | - |
| CSB84_RS15555 | - | 902474..902567 (+) | 94 | Protein_859 | hypothetical protein | - |
| CSB84_RS04890 | - | 902555..903171 (+) | 617 | Protein_860 | DUF4355 domain-containing protein | - |
| CSB84_RS04895 | - | 903185..904155 (+) | 971 | Protein_861 | phage major capsid protein | - |
| CSB84_RS04900 | - | 904177..904461 (+) | 285 | Protein_862 | hypothetical protein | - |
| CSB84_RS04905 | - | 904470..904801 (+) | 332 | Protein_863 | phage head-tail connector protein | - |
| CSB84_RS04910 | - | 904798..905096 (+) | 299 | Protein_864 | hypothetical protein | - |
| CSB84_RS04915 | - | 905096..905441 (+) | 346 | Protein_865 | HK97-gp10 family putative phage morphogenesis protein | - |
| CSB84_RS04920 (CSB84_0878) | - | 905453..905835 (+) | 383 | Protein_866 | hypothetical protein | - |
| CSB84_RS04925 (CSB84_0879) | - | 905915..906431 (+) | 517 | Protein_867 | phage major tail protein, TP901-1 family | - |
| CSB84_RS04930 | - | 906493..906857 (+) | 365 | Protein_868 | tail assembly chaperone | - |
| CSB84_RS04935 | - | 906887..907230 (+) | 344 | Protein_869 | hypothetical protein | - |
| CSB84_RS15560 | - | 907261..910700 (+) | 3440 | Protein_870 | hypothetical protein | - |
| CSB84_RS04965 | - | 910713..911679 (+) | 967 | Protein_871 | phage tail family protein | - |
| CSB84_RS04970 | - | 911663..913559 (+) | 1897 | Protein_872 | SGNH/GDSL hydrolase family protein | - |
| CSB84_RS15405 | - | 913574..915481 (+) | 1908 | Protein_873 | hypothetical protein | - |
| CSB84_RS04985 (CSB84_0894) | - | 915481..917304 (+) | 1824 | WP_000259619.1 | BppU family phage baseplate upper protein | - |
| CSB84_RS04990 (CSB84_0895) | - | 917304..917681 (+) | 378 | WP_000705896.1 | DUF2977 domain-containing protein | - |
| CSB84_RS04995 (CSB84_0896) | - | 917685..917858 (+) | 174 | WP_000782200.1 | XkdX family protein | - |
| CSB84_RS05000 (CSB84_0897) | - | 917898..918197 (+) | 300 | WP_000466778.1 | DUF2951 domain-containing protein | - |
| CSB84_RS05005 (CSB84_0898) | - | 918334..920232 (+) | 1899 | WP_000524019.1 | glucosaminidase domain-containing protein | - |
| CSB84_RS05010 (CSB84_0899) | - | 920245..921483 (+) | 1239 | WP_000276662.1 | BppU family phage baseplate upper protein | - |
| CSB84_RS05015 (CSB84_0900) | - | 921489..921884 (+) | 396 | WP_000398868.1 | hypothetical protein | - |
| CSB84_RS05020 (CSB84_0901) | - | 921940..922377 (+) | 438 | WP_000354132.1 | phage holin | - |
| CSB84_RS05025 (CSB84_0902) | - | 922358..923803 (+) | 1446 | WP_001148130.1 | SH3 domain-containing protein | - |
| CSB84_RS05030 (CSB84_0903) | - | 924209..924871 (+) | 663 | WP_000385047.1 | hypothetical protein | - |
| CSB84_RS05035 (CSB84_0904) | - | 924886..925527 (+) | 642 | WP_001190816.1 | hypothetical protein | - |
| CSB84_RS05040 | - | 925628..925708 (-) | 81 | WP_100250272.1 | hypothetical protein | - |
| CSB84_RS05045 (CSB84_0905) | - | 926055..926216 (+) | 162 | WP_001005407.1 | SE1561 family protein | - |
| CSB84_RS05050 (CSB84_0906) | - | 926347..926862 (+) | 516 | WP_000163283.1 | type 1 glutamine amidotransferase domain-containing protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15872.58 Da Isoelectric Point: 8.4825
>NTDB_id=294788 CSB84_RS04750 WP_000934385.1 889558..889986(+) (ssbA) [Staphylococcus aureus strain AR_0228]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=294788 CSB84_RS04750 WP_000934385.1 889558..889986(+) (ssbA) [Staphylococcus aureus strain AR_0228]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.14 |
100 |
0.704 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.606 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
74.648 |
0.437 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.958 |
100 |
0.423 |
| ssbA | Streptococcus mutans UA159 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.141 |
100 |
0.401 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
39.437 |
100 |
0.394 |
| ssbB/cilA | Streptococcus mitis SK321 |
39.437 |
100 |
0.394 |